Factsheet for GSMUA_Achr1P02830_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12240_001
GSMUA_Achr4P28830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	GSMUA_Achr2P12240_001	AT4G22890.1	18243102
AT5G66190.1	GSMUA_Achr4P28830_001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	85.83	86.31
KRH69775	Soybean	plastid	84.44	83.98
KRH08061	Soybean	nucleus, plastid	83.06	82.6
VIT_04s0023g03510.t01	Wine grape	plastid	82.78	82.32
KRH28804	Soybean	plastid	82.78	82.32
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	81.94	81.27
AT5G66190.1	Thale cress	plastid	80.56	80.56
CDX81408	Canola	plastid	80.28	79.61
PGSC0003DMT400009192	Potato	extracellular	80.0	79.56
CDY18592	Canola	plastid	79.72	79.28
Solyc02g062130.2.1	Tomato	plastid	79.72	79.28
Bra037182.1-P	Field mustard	plastid	79.44	78.79
Os06t0107700-01	Rice	plastid	76.11	75.69
GSMUA_Achr8P13460_001	Banana	plastid	88.33	75.36
Zm00001d011833_P001	Maize	plastid	76.67	74.8
EES04249	Sorghum	plastid	76.39	74.73
Zm00001d045575_P001	Maize	plastid	73.61	74.65
EER89050	Sorghum	plastid	74.72	74.52
Solyc02g083810.2.1	Tomato	plastid	75.56	73.51
TraesCS6D01G012200.1	Wheat	plastid, unclear	73.33	73.13
Os02t0103800-01	Rice	plastid	74.17	72.95
TraesCS6B01G015000.1	Wheat	plastid	73.06	72.45
TraesCS6A01G009200.1	Wheat	plastid	72.78	72.18
TraesCS7D01G016800.1	Wheat	plastid	72.5	72.1
TraesCS4A01G472500.1	Wheat	plastid	72.22	71.82
TraesCS7A01G020500.1	Wheat	plastid	71.67	71.47
HORVU7Hr1G002210.8	Barley	plastid	67.22	67.22
HORVU6Hr1G000620.2	Barley	plastid	72.5	65.25
CDY55097	Canola	vacuole	67.5	64.12
Zm00001d042049_P001	Maize	plastid	75.28	55.65
CDX83820	Canola	endoplasmic reticulum, plasma membrane	22.22	46.24
GSMUA_Achr4P31670_001	Banana	plastid	43.89	41.47
GSMUA_Achr4P28350_001	Banana	plastid	41.67	40.21
CDY57760	Canola	plastid	78.33	28.09

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr1G02830_001	EnsemblPlants:GSMUA_Achr1P02830_001	EnsemblPlants:GSMUA_Achr1T02830_001
InterPro:IPR017927	UniProt:M0RWJ1	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI00029681BD	SEG:seg	:

Description

Ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G02830_001]

Coordinates

chr1:+:2290986..2293317

Molecular Weight (calculated)

39803.1 Da

IEP (calculated)

9.044

GRAVY (calculated)

-0.280

Length

360 amino acids

Sequence
(BLAST)

001: MASAAVTAAV SLPSSKPSLS PASLERISFH KTCLHPRSTA AAKAGRLVTV RAQVTTEAPA KVAKVSKKDD EGVVTNKYKP KEPYIGRCLI NTKITGDDAP
101: GETNHIVFST EGEIPYREGQ SIGVIADGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNEQ GEIVKGVCSN FLCDLKPGAA VKITGPVGKE
201: MLMPKDPNAT VVMLGTGTGI APFRAFLWKM FFEKHENYKF NGLAWLFLGV PTSSSLLYKE EFEKMKELAP ENFRLDFAVS REQTNEKGEK MYIQTRMAQY
301: ASELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLTYKRELK KAEQWNVEVY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.