Factsheet for Bra012203.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013653.1-P
Bra019349.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	Bra013653.1-P	AT4G22890.1	18243102
AT1G20020.1	Bra019349.1-P	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57601	Canola	plastid	99.18	99.18
CDY43420	Canola	plastid	94.82	95.6
Bra016481.1-P	Field mustard	plastid	93.46	94.23
AT1G20020.1	Thale cress	plastid	91.01	90.51
Os06t0107700-01	Rice	plastid	73.57	74.59
Zm00001d045575_P001	Maize	plastid	71.66	74.08
Bra037182.1-P	Field mustard	plastid	72.75	73.55
TraesCS7A01G020500.1	Wheat	plastid	72.21	73.41
TraesCS7D01G016800.1	Wheat	plastid	72.21	73.2
TraesCS4A01G472500.1	Wheat	plastid	71.93	72.93
EER89050	Sorghum	plastid	71.39	72.58
TraesCS6B01G015000.1	Wheat	plastid	69.21	69.97
EES04249	Sorghum	plastid	69.75	69.57
HORVU7Hr1G002210.8	Barley	plastid	68.12	69.44
TraesCS6D01G012200.1	Wheat	plastid, unclear	68.12	69.25
TraesCS6A01G009200.1	Wheat	plastid	68.39	69.15
Zm00001d011833_P001	Maize	plastid	68.94	68.56
Os02t0103800-01	Rice	plastid	68.12	68.31
HORVU6Hr1G000620.2	Barley	plastid	67.85	62.25
Bra012057.1-P	Field mustard	plastid	29.43	61.71
Zm00001d042049_P001	Maize	plastid	69.21	52.16
Bra029574.1-P	Field mustard	plastid	43.32	42.06
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	42.23	37.08

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	EnsemblPlantsGene:Bra012203	EnsemblPlants:Bra012203.1
EnsemblPlants:Bra012203.1-P	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114
InterPro:IPR017927	UniProt:M4D6U3	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF5
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000254160C	SEG:seg	:

Description

AT1G20020 (E=7e-176) ATLFNR2, FNR2 | FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding

Coordinates

chrA07:-:9324800..9326614

Molecular Weight (calculated)

40867.0 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.389

Length

367 amino acids

Sequence
(BLAST)

001: MASTLNAAVS LTSSKSSSLP ATSYAIAPDR IRFAKGAFNY KSNNVVTSRR LVSVRAEVTT TDTPPVKKVK KESKKNEEGV ITNKYRPKEP YTGKVLLNTK
101: ITADDAPGET WHMVFSHQGE IPYREGQSVG VIADGIDKNG KPNKVRLYSI ASSALGDLGN SETVSLCVKR LVYTNDAGEV VKGVCSNFLC DLKPGSDVKL
201: TGPVGKEMLM PKDPNATVIM LATGTGIAPF RSFLWKMFFE KHDDYKFNGL AWLFLGVPTT SSLLYTDEFD KMKAKAPENF RVDYAISREQ ANDKGEKMYI
301: QTRMAQYAPE LWELLKKDNT FVYMCGLKGM EKGIDDIMVS LAANDGIDWF DYKKQLKKAE QWNVEVY

Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.