Factsheet for Solyc03g114450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062981	Potato	plastid	91.33	91.79
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	44.39	64.44
AT5G23060.1	Thale cress	plastid	61.99	62.79
CDY23708	Canola	plastid	60.2	61.3
KRH03216	Soybean	nucleus, plastid	61.99	61.21
Bra013013.1-P	Field mustard	plastid	59.44	60.21
CDY02202	Canola	plastid	59.18	59.95
CDY62677	Canola	plastid	59.18	59.95
KRH56726	Soybean	nucleus, plastid	59.69	59.09
VIT_17s0000g04490.t01	Wine grape	plastid	58.67	53.99
GSMUA_Achr9P18370_001	Banana	cytosol	56.63	42.94
Solyc03g059170.2.1	Tomato	nucleus, plastid	5.36	16.94
Solyc03g059180.2.1	Tomato	plastid	13.78	10.11

Protein Annotations

MapMan:26.5.1.2	Gene3D:3.40.250.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009704	GO:GO:0009791	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0071277	GO:GO:0090333	InterPro:IPR001763	InterPro:IPR036873
UniProt:K4BKU7	PFAM:PF00581	PFscan:PS50206	PANTHER:PTHR34209	PANTHER:PTHR34209:SF2	InterPro:Rhodanese-like_dom
InterPro:Rhodanese-like_dom_sf	SUPFAM:SSF52821	EnsemblPlantsGene:Solyc03g114450.2	EnsemblPlants:Solyc03g114450.2.1	TMHMM:TMhelix	UniParc:UPI000276839D
SEG:seg	:	:	:	:	:

Description

Calcium sensing receptor, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G23060) UniProtKB/Swiss-Prot;Acc:Q9FN48]

Coordinates

chr3:+:64448248..64451515

Molecular Weight (calculated)

41660.3 Da

IEP (calculated)

9.859

GRAVY (calculated)

0.002

Length

392 amino acids

Sequence
(BLAST)

001: MALRASATAK SPLPLPPPPP SSSSSTSSPP KVFSLPKLTQ KPVSVSFSTS TALFLFPLFT ATHEARAINL PKEDIVSSLN QVESVVNQAQ EVGSNIFDTV
101: SGVIGPVIEF VKPGIDAALP LVKQAGEEVL KNASPVISDA TKKAQEAMQS AGMDSEPVMT AAKTVVDAAQ QTSKVIEGAK PIATSTVETI SSTDPAVIAV
201: AGGTLFLAYL LLPPVFSALS FSFRGYKGEL TPAQTLDNMC SKNYVLIDIR TEKDKDKAGI PRLPSSAKNK MIQIPLEDLP SKVKSLVRNP KKVEAEIVAL
301: KISFLKKINK GSNIVIMDSY SDSAKTVAKS LTSFGFNNCW IMTDGFSGGK GWLQSRLGTD SYNFSFAEIL SPSRVIPGRR FGTTGTVKLL SD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.