Factsheet for VIT_17s0000g04490.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03216	Soybean	nucleus, plastid	63.85	68.51
KRH56726	Soybean	nucleus, plastid	62.44	67.17
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	42.25	66.67
AT5G23060.1	Thale cress	plastid	58.92	64.86
CDY23708	Canola	plastid	57.75	63.9
Bra013013.1-P	Field mustard	plastid	57.98	63.82
CDY02202	Canola	plastid	57.98	63.82
CDY62677	Canola	plastid	57.75	63.57
PGSC0003DMT400062981	Potato	plastid	54.93	60.0
Solyc03g114450.2.1	Tomato	plastid	53.99	58.67
Os02t0729400-01	Rice	cytosol, nucleus, plastid	44.37	57.1
TraesCS6D01G271900.1	Wheat	plastid	45.07	49.36
TraesCS6B01G320900.1	Wheat	plastid	44.84	49.1
EES05589	Sorghum	plastid	44.6	48.97
TraesCS6A01G290600.1	Wheat	plastid	44.37	48.59
Zm00001d051746_P001	Maize	plastid	44.13	47.59
HORVU6Hr1G072740.1	Barley	cytosol, plastid	44.6	43.88
GSMUA_Achr9P18370_001	Banana	cytosol	52.58	43.33
VIT_05s0094g00820.t01	Wine grape	plastid	15.26	10.02

Protein Annotations

MapMan:26.5.1.2	Gene3D:3.40.250.10	ProteinID:CCB43173	ProteinID:CCB43173.1	UniProt:F6GTG4	EMBL:FN594950
InterPro:IPR001763	InterPro:IPR036873	PFscan:PS50206	PANTHER:PTHR34209	PANTHER:PTHR34209:SF2	InterPro:Rhodanese-like_dom
InterPro:Rhodanese-like_dom_sf	SUPFAM:SSF52821	TIGR:TC53395	TIGR:TC66035	UniParc:UPI000210AC1C	ArrayExpress:VIT_17s0000g04490
EnsemblPlantsGene:VIT_17s0000g04490	EnsemblPlants:VIT_17s0000g04490.t01	unigene:Vvi.2715	RefSeq:XP_002271070	RefSeq:XP_002271070.2	SEG:seg

Description

No Description!

Coordinates

chr17:+:4729366..4732289

Molecular Weight (calculated)

45487.8 Da

IEP (calculated)

10.296

GRAVY (calculated)

-0.105

Length

426 amino acids

Sequence
(BLAST)

001: MQKWPGVGGS NEFSAPRKRN GPMGKVEMAL QASATVRHPF SAPPPSLSPT PRASSSPFKP PPKPQLRPIS ISLPASITIP LFSLFTPPHE AKAVSIPKDQ
101: IVSSITEVEK KIDEIQEVGS GFLDTTQRIL EVVANALKPG IDAAGPILKQ AGEQASKIAS PAISEASKTA EEAIQSSGLD TAPILNAAKT VTEAAQQTTK
201: LIQEAKPIAS STVETISTAE PTVIVGTAGA LFVAYLLFPP IWSVISFSLR GYKGELTPAQ TLDLVSTKNY VMIDIRSEKD KEKTGIPRFP SGAKNRIFAI
301: PLEELPSKLR GLVRNSKKVE AEIVAVKISY LKKISKSSNI VIMDSYSDSA KIVARVLTSL GFKDCWTVAG GFSGSRGWLQ SRLGTDYYNF AFAEIVSPSR
401: VIPAALRRFG TTGSRSGQKL LPGSSD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.