Factsheet for Zm00001d051746_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 19688749
plastid: 20089766
plastid: 22065420
plastid: 22833285
plastid: 23198870

msms PMID: 19688749 doi

C Zörb, R Herbst, C Forreiter, S Schubert

Institute of Plant Nutrition (IFZ), Justus Liebig University Giessen, Giessen, Germany. czoerb@plantnutrition.uni-kiel.de

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22833285 doi

R Fristedt, W Wasilewska, E Romanowska, AV Vener

Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05589	Sorghum	plastid	82.78	84.28
Os02t0729400-01	Rice	cytosol, nucleus, plastid	65.06	77.64
TraesCS6B01G320900.1	Wheat	plastid	65.06	66.07
TraesCS6D01G271900.1	Wheat	plastid	64.81	65.81
TraesCS6A01G290600.1	Wheat	plastid	64.05	65.04
HORVU6Hr1G072740.1	Barley	cytosol, plastid	63.04	57.51
KRH03216	Soybean	nucleus, plastid	51.9	51.64
KRH56726	Soybean	nucleus, plastid	51.14	51.01
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	34.68	50.74
Bra013013.1-P	Field mustard	plastid	48.86	49.87
PGSC0003DMT400062981	Potato	plastid	49.11	49.74
AT5G23060.1	Thale cress	plastid	47.34	48.32
VIT_17s0000g04490.t01	Wine grape	plastid	47.59	44.13
GSMUA_Achr9P18370_001	Banana	cytosol	54.68	41.78
Solyc03g059170.2.1	Tomato	nucleus, plastid	5.06	16.13
CDX71878	Canola	nucleus, plastid	3.04	11.76
Zm00001d042526_P001	Maize	plastid	18.23	11.76

Protein Annotations

MapMan:26.5.1.2	Gene3D:3.40.250.10	ProteinID:AQK55059.1	EMBL:BT070174	UniProt:C0PPF5	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001763	InterPro:IPR036873
PFAM:PF00581	PFscan:PS50206	PANTHER:PTHR34209	PANTHER:PTHR34209:SF2	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf
SUPFAM:SSF52821	UniParc:UPI000195D5E2	EnsemblPlantsGene:Zm00001d051746	EnsemblPlants:Zm00001d051746_P001	EnsemblPlants:Zm00001d051746_T001	SEG:seg

Description

Calcium sensing receptor chloroplastic

Coordinates

chr4:-:168639313..168641361

Molecular Weight (calculated)

40068.3 Da

IEP (calculated)

10.298

GRAVY (calculated)

0.155

Length

395 amino acids

Sequence
(BLAST)

001: MAPVPVSVSA TLAPPPAAPP KATSRSWERR APADAAFAAA SSVAISAALL TLTPAAPAAA LSKEDVAGSL TKAVDTVSQA IDVGGKAAEQ VAAVLKALGE
101: AVKPALPVLK SASDEALKLA APVVSAASKQ ATEALQGAGV DPAPVLSVAK TAAEQSTKVI DAAKPVASAA VETITSLGPE DYVVAAGAAF LAYLLVPPVW
201: SLVSSSLRGY KGDLTPAQAL DKVTTQGYVL IDVRSDKDKA KAGLPQLPSN AKNKLVSVPL EDLPSKLKGM VRNAKKAEAE IAALKISYLK KIGKGSNVII
301: MDSYSDVAKT VAKTLDSVGF KNCWVMAGGF SGRKGWAQSR LGTDSYNLSV VEVVTPSRVI PAVAGRRTGT TAARIGTASS ASRATTRKLL PGGVD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.