Factsheet for PGSC0003DMT400062981

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114450.2.1	Tomato	plastid	91.79	91.33
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	44.36	64.07
AT5G23060.1	Thale cress	plastid	62.31	62.79
CDY23708	Canola	plastid	60.77	61.56
Bra013013.1-P	Field mustard	plastid	60.0	60.47
CDY02202	Canola	plastid	59.74	60.21
CDY62677	Canola	plastid	59.74	60.21
KRH03216	Soybean	nucleus, plastid	61.28	60.2
KRH56726	Soybean	nucleus, plastid	59.23	58.33
Os02t0729400-01	Rice	cytosol, nucleus, plastid	48.46	57.1
VIT_17s0000g04490.t01	Wine grape	plastid	60.0	54.93
Zm00001d051746_P001	Maize	plastid	49.74	49.11
EES05589	Sorghum	plastid	48.21	48.45
TraesCS6B01G320900.1	Wheat	plastid	47.69	47.81
TraesCS6D01G271900.1	Wheat	plastid	47.44	47.56
TraesCS6A01G290600.1	Wheat	plastid	47.18	47.3
GSMUA_Achr9P18370_001	Banana	cytosol	56.67	42.75
HORVU6Hr1G072740.1	Barley	cytosol, plastid	46.41	41.8

Protein Annotations

EntrezGene:102600011	MapMan:26.5.1.2	Gene3D:3.40.250.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009704	GO:GO:0009791
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0071277	GO:GO:0090333	InterPro:IPR001763
InterPro:IPR036873	UniProt:M1C9W6	EnsemblPlantsGene:PGSC0003DMG400024508	PGSC:PGSC0003DMG400024508	EnsemblPlants:PGSC0003DMT400062981	PFscan:PS50206
PANTHER:PTHR34209	PANTHER:PTHR34209:SF2	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	SUPFAM:SSF52821	TMHMM:TMhelix
UniParc:UPI000295BC22	RefSeq:XP_006345067.1	SEG:seg	:	:	:

Description

Extracellular Ca2+ sensing receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400024508]

Coordinates

chr3:+:54437065..54440400

Molecular Weight (calculated)

41320.8 Da

IEP (calculated)

9.966

GRAVY (calculated)

0.019

Length

390 amino acids

Sequence
(BLAST)

001: MALRASATAK SPLPPPPSSS SSSTSSPPIV LNLPKLTQKT VSVAFSTSTA LFLFPLFTAT HEARAISLPK EDIVSSLNQV ESAVNQAQEV GSNIFDTISG
101: VIGPVIEFVK PGIDAALPLV KQAGEEVLKN ASPVISDVTK KAQEAMQSAG MDSQPVMTAA KTVVDAAQQT SKVIEGAKPI ASSTVQTISS TDPAVIAVAG
201: GTLFLAYLLL PPVFSALSFS FRGYKGELTP AQTLDNMCSK NYVLIDIRTE KDKDKAGIPR LPSSAKNKMI QIPLEDLPSK VKSLVRNPKK VEAEIVALKI
301: SFLKKVNKGS NIVIMDSYSD SAKTVAKSLT SFGFNNCWIM TDGFSGGKGW LQSRLGTDSY NFSFAEILSP SRGIPGRRFG TTGTVKLLSD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.