CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	67.01	95.56
CDY02202	Canola	plastid	91.95	91.47
CDY62677	Canola	plastid	91.69	91.21
AT5G23060.1	Thale cress	plastid	88.57	88.11
KRH03216	Soybean	nucleus, plastid	66.49	64.48
KRH56726	Soybean	nucleus, plastid	65.45	63.64
PGSC0003DMT400062981	Potato	plastid	61.56	60.77
Solyc03g114450.2.1	Tomato	plastid	61.3	60.2
VIT_17s0000g04490.t01	Wine grape	plastid	63.9	57.75
GSMUA_Achr9P18370_001	Banana	cytosol	59.22	44.1
CDX71878	Canola	nucleus, plastid	3.9	14.71
CDX98394	Canola	plastid	18.18	10.51
CDX67812	Canola	plastid	17.4	10.08

Protein Annotations

EnsemblPlants:CDY23708	EnsemblPlantsGene:GSBRNA2T00024022001	Gene3D:3.40.250.10	InterPro:IPR001763	InterPro:IPR036873	InterPro:Rhodanese-like_dom
InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR34209	PANTHER:PTHR34209:SF2	PFscan:PS50206	ProteinID:CDY23708	ProteinID:CDY23708.1
SEG:seg	SUPFAM:SSF52821	TMHMM:TMhelix	UniParc:UPI0004EE110C	UniProt:A0A078GGG1	MapMan:26.5.1.2

Description

BnaC01g24130DBnaC01g24130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGG1]

Coordinates

chrLK032147:+:458528..460419

Molecular Weight (calculated)

41187.7 Da

IEP (calculated)

9.993

GRAVY (calculated)

-0.013

Length

385 amino acids

Sequence
(BLAST)

001: MAMAEMAMKS SVTAKLTIPS SSSCKKRVKQ ISVALPTTTS ISLLSVFSSP PPEAKAAVSV SKDQIVSSLT EVEKTINQVQ ETGSSVFDAT QRVFQVVGDA
101: LKLALDTALP IAKQAGEEAL KIASPAFSEA SKKAQEAMKS SGIDAEPVFN AAKTVTDVAQ QTTKAIEDAR PIASSTMETI SAADPSVVVV AAGAAFIAYL
201: LLPPVWSAIS FNFRGYKGDL TPAQTLDLLC SKNYLMVDIR SEKEKEKAGI PRLPSNAKNS MIAIPLEELP NKVKGIVRNS KRVEAEIAAL KISYLKRFNK
301: GSNIIIMDSY SDSAKIVAKT LKVLGFKNCW IVTDGFSGGR GWLQSRLGTD SYNFSFAQVL SPSRIIPAAS RFGTRSETKF LPSSD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.