CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03216	Soybean	nucleus, plastid	91.67	91.44
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	46.97	68.89
AT5G23060.1	Thale cress	plastid	65.91	67.44
CDY02202	Canola	plastid	65.4	66.93
Bra013013.1-P	Field mustard	plastid	65.15	66.67
CDY62677	Canola	plastid	64.9	66.41
CDY23708	Canola	plastid	63.64	65.45
VIT_17s0000g04490.t01	Wine grape	plastid	67.17	62.44
Solyc03g114450.2.1	Tomato	plastid	59.09	59.69
PGSC0003DMT400062981	Potato	plastid	58.33	59.23
Os02t0729400-01	Rice	cytosol, nucleus, plastid	48.74	58.31
Zm00001d051746_P001	Maize	plastid	51.01	51.14
TraesCS6B01G320900.1	Wheat	plastid	49.75	50.64
EES05589	Sorghum	plastid	49.49	50.52
TraesCS6D01G271900.1	Wheat	plastid	49.49	50.39
TraesCS6A01G290600.1	Wheat	plastid	48.74	49.61
GSMUA_Achr9P18370_001	Banana	cytosol	60.86	46.62
HORVU6Hr1G072740.1	Barley	cytosol, plastid	48.23	44.11
KRG97340	Soybean	plastid	16.92	10.31
KRH31574	Soybean	plastid	16.16	9.95

Protein Annotations

EMBL:ACUP02002797	EnsemblPlants:KRH56726	EnsemblPlantsGene:GLYMA_05G016000	EntrezGene:100806845	Gene3D:3.40.250.10	InterPro:IPR001763
InterPro:IPR036873	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	ncoils:Coil	PANTHER:PTHR34209	PANTHER:PTHR34209:SF2
PFAM:PF00581	PFscan:PS50206	ProteinID:KRH56726	ProteinID:KRH56726.1	SEG:seg	SUPFAM:SSF52821
UniParc:UPI0002339B29	UniProt:I1K180	MapMan:26.5.1.2	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:1447802..1450865

Molecular Weight (calculated)

41743.2 Da

IEP (calculated)

9.865

GRAVY (calculated)

-0.014

Length

396 amino acids

Sequence
(BLAST)

001: MEITAMASSA TPPRPSLPTP STSPHTVVTT TFSKPQLRRS HIALPTSTTI SLLALFAPPN EAKAAVSIAK DQIVSSLTQV EKTLDQVQEM GSGVLDTAQR
101: VAEVIGNALK PGIETALPIV QQAGEEALKI ASPAISEASK KAQEALQSSG VDTEPVITAA KTVADAAQQT TKVIEVAKPI ASSTVETISS SDPTVIAGTA
201: GALFVAYLLI PPIGSVILSN LRGYKGDLTP AQALDLISTQ NYVLIDIRSE KDKDRAGIPR LPSNAKNRMA AIPLEELQSK LRGQVKNVKK LEAEIVALKI
301: SYLKKINKGT NVVILDSYSD VAKTVGRTLT SLGFKNTWIV ADGFSGNKGW LQSRLGTDSY NFSFAEVLSP SRVIPAAVRS FGTTSQSSTK LLPGAD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.