CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051746_P001	Maize	plastid	84.28	82.78
Os02t0729400-01	Rice	cytosol, nucleus, plastid	68.81	80.66
TraesCS6D01G271900.1	Wheat	plastid	66.49	66.32
TraesCS6B01G320900.1	Wheat	plastid	66.49	66.32
TraesCS6A01G290600.1	Wheat	plastid	65.72	65.55
HORVU6Hr1G072740.1	Barley	cytosol, plastid	64.69	57.97
KRH03216	Soybean	nucleus, plastid	52.06	50.88
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	34.79	50.0
KRH56726	Soybean	nucleus, plastid	50.52	49.49
Bra013013.1-P	Field mustard	plastid	48.97	49.1
PGSC0003DMT400062981	Potato	plastid	48.45	48.21
AT5G23060.1	Thale cress	plastid	47.42	47.55
VIT_17s0000g04490.t01	Wine grape	plastid	48.97	44.6
GSMUA_Achr9P18370_001	Banana	cytosol	55.41	41.59
Solyc03g059170.2.1	Tomato	nucleus, plastid	5.15	16.13
EES04035	Sorghum	plastid	18.81	11.93
CDX71878	Canola	nucleus, plastid	2.84	10.78

Protein Annotations

MapMan:26.5.1.2	Gene3D:3.40.250.10	EntrezGene:8071736	UniProt:C5XZD9	ncoils:Coil	EnsemblPlants:EES05589
ProteinID:EES05589	ProteinID:EES05589.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007275	GO:GO:0008150	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009704	GO:GO:0009791	GO:GO:0009987	GO:GO:0016020	GO:GO:0071277
GO:GO:0090333	InterPro:IPR001763	InterPro:IPR036873	PFAM:PF00581	PFscan:PS50206	PANTHER:PTHR34209
PANTHER:PTHR34209:SF2	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	EnsemblPlantsGene:SORBI_3004G251500	SUPFAM:SSF52821	unigene:Sbi.15854
UniParc:UPI0001A85526	RefSeq:XP_002452613.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:59791612..59793970

Molecular Weight (calculated)

39399.5 Da

IEP (calculated)

10.204

GRAVY (calculated)

0.159

Length

388 amino acids

Sequence
(BLAST)

001: MAPMSVPATL APPAPPKASP TARSSARRAP AADAASVAAS SVAGSAALLT LTPAAPAAAL SKEDVAGSLI KVVDTVDDVI GVGGKAAEQV AAVLKALGEA
101: VQPAFPVLKS ASDEALKLAA PVVSGASKQA TEALQGAGVD PAPVLSVAKT AAEQSTKVID AAKPVASATV ETITTLGPEG YVVTAGAALL AYLLVPPVWS
201: LVSFSLRGYK GDLTPAQALD KVTTQDYVLI DVRSDKDKAK AGVPQLPSNA KNQLVSVPLE DLPSKLKGMV RNAKKAEAEI AALKISYLKK IGKGSNVIIM
301: DSYNDVSKTV AKTLNSVGFK NCWVMAGGFS GRKGWAQSRL GTDSYNLSVV EVVTPSRVIP AVAGRTGTTS ARIASRATTR KLLPGSVD

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.