CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56726	Soybean	nucleus, plastid	91.44	91.67
AT5G23060.1	Thale cress	plastid	67.25	68.99
Bra037620.1-P	Field mustard	cytosol, peroxisome, plastid	46.85	68.89
CDY02202	Canola	plastid	65.74	67.44
Bra013013.1-P	Field mustard	plastid	65.49	67.18
CDY62677	Canola	plastid	65.24	66.93
CDY23708	Canola	plastid	64.48	66.49
VIT_17s0000g04490.t01	Wine grape	plastid	68.51	63.85
Solyc03g114450.2.1	Tomato	plastid	61.21	61.99
PGSC0003DMT400062981	Potato	plastid	60.2	61.28
Os02t0729400-01	Rice	cytosol, nucleus, plastid	49.62	59.52
TraesCS6B01G320900.1	Wheat	plastid	51.89	52.96
TraesCS6D01G271900.1	Wheat	plastid	51.64	52.7
EES05589	Sorghum	plastid	50.88	52.06
TraesCS6A01G290600.1	Wheat	plastid	50.88	51.93
Zm00001d051746_P001	Maize	plastid	51.64	51.9
GSMUA_Achr9P18370_001	Banana	cytosol	60.2	46.23
HORVU6Hr1G072740.1	Barley	cytosol, plastid	50.13	45.96
KRG97340	Soybean	plastid	16.62	10.15
KRH31574	Soybean	plastid	15.87	9.8

Protein Annotations

EMBL:ACUP02010337	EMBL:BT095993	EnsemblPlants:KRH03216	EnsemblPlantsGene:GLYMA_17G084300	EntrezGene:100813363	Gene3D:3.40.250.10
InterPro:IPR001763	InterPro:IPR036873	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR34209	PANTHER:PTHR34209:SF2
PFAM:PF00581	PFscan:PS50206	ProteinID:KRH03216	ProteinID:KRH03216.1	SEG:seg	SMART:SM00450
SUPFAM:SSF52821	UniParc:UPI0001B16BE1	UniProt:C6TEH0	MapMan:26.5.1.2	:	:

Description

hypothetical protein

Coordinates

chr17:-:6520687..6523318

Molecular Weight (calculated)

41816.2 Da

IEP (calculated)

10.032

GRAVY (calculated)

0.017

Length

397 amino acids

Sequence
(BLAST)

001: MEISALASSA TPRPSLTTPS TSPHTVVTTT FSKPQLRRSH VAVSLPTSTT ISLLALFAPP SEAKAAVSIA KDQIVSSLTQ VEKTLDQVQE VGSGVLDTAQ
101: RIAEVIGNAL KPGIETALPI VQQAGEEALK IASPAISEAS KKAQEALQSS GVDTEPVISA AKTVADAAQQ TTKVIEVAKP IASSTVKTIS SSDPTVIAGT
201: AGALFVAYLL IPPIWSVISS NLRGYKGDLT PAQALDLIST QNYVLIDIRS EKDKDKAGIP RLPSNAKNRM VAIPLEELPS KLRGQVKNVK KLEAEIVALK
301: ISYLKKINKG TNVVILDSYS DVAKTVGRTL TSLGFKNTWI VADGFSGNKG WLQSRLGTDS YNFSFAEVLS PSRVIPAAVR SFGTTSQSST KLLPGAE

Best Arabidopsis Sequence Match ( AT5G23060.1 )
(BLAST)

001: MAMAEMATKS SLSAKLTLPS SSTKKTLSLR QVSVSLPTST SISLLSLFAS PPHEAKAAVS IPKDQIVSSL TEVEKTINQV QETGSSVFDA TQRVFQVVGD
101: ALKPALDTAL PIAKQAGEEA MKLASPAFSE ASKKAQEAMQ SSGFDSEPVF NAAKTVTDVA QQTSKAIEDA KPIASSTMDT ISSADPSVIV VAAGAAFLAY
201: LLLPPVFSAI SFNFRGYKGD LTPAQTLDLL CTKNYLMVDI RSEKDKEKAG IPRLPSNAKN RVISIPLEEL PNKVKGIVRN SKRVEAEIAA LKISYLKKIN
301: KGSNIIILDS YTDSAKIVAK TLKVLGYKNC YIVTDGFSGG RGWLQSRLGT DSYNFSFAQV LSPSRIIPAA SRSFGTRSGT KFLPSSD

Arabidopsis Description

CASCalcium sensing receptor, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FN48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.