Factsheet for Zm00001d042526_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04035	Sorghum	plastid	94.44	94.44
TraesCS3B01G430900.1	Wheat	plastid	69.12	70.62
Os01t0896500-01	Rice	plasma membrane	71.57	70.31
TraesCS3A01G398500.1	Wheat	plastid	68.46	69.95
TraesCS3D01G392600.1	Wheat	plastid	68.46	69.95
HORVU3Hr1G089650.2	Barley	plastid	68.14	69.38
GSMUA_Achr8P32230_001	Banana	cytosol, plastid	27.45	57.53
VIT_05s0094g00820.t01	Wine grape	plastid	42.48	40.06
KRH31574	Soybean	plastid	40.85	38.88
KRG97340	Soybean	plastid	40.85	38.46
CDX67812	Canola	plastid	40.03	36.84
CDX98394	Canola	plastid	39.22	36.04
AT3G59780.1	Thale cress	plastid	39.71	35.42
Solyc03g059180.2.1	Tomato	plastid	30.39	34.83
Bra003389.1-P	Field mustard	plastid	38.24	34.01
Zm00001d051746_P001	Maize	plastid	11.76	18.23

Protein Annotations

EntrezGene:100501574	Gene3D:3.40.250.10	MapMan:35.2	EMBL:BT085664	UniProt:C4J4B7	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0009507	GO:GO:0009534
GO:GO:0009536	GO:GO:0009579	InterPro:IPR001763	InterPro:IPR036873	ProteinID:ONM35698.1	PFAM:PF00581
PFscan:PS50206	PANTHER:PTHR34209	PANTHER:PTHR34209:SF1	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	SMART:SM00450
SUPFAM:SSF52821	UniParc:UPI0001A4C586	EnsemblPlantsGene:Zm00001d042526	EnsemblPlants:Zm00001d042526_P001	EnsemblPlants:Zm00001d042526_T001	SEG:seg

Description

Rhodanese/Cell cycle control phosphatase superfamily protein

Coordinates

chr3:+:170861366..170869496

Molecular Weight (calculated)

64649.0 Da

IEP (calculated)

4.636

GRAVY (calculated)

-0.002

Length

612 amino acids

Sequence
(BLAST)

001: MSPPAMLLPV CSAAPSCSPL CPVTASHVVA RVARRVDVGA ALRSYADSLV AQVPDRPPLA DSSILSPYIA APDDIARAFG APASELPPLP SADPSPGLCC
101: TGTDQPLAAV ADLAATAVVN SAPTDAAERA LSDAPFPSTF PSDASEVEDS VARLIDKVGK QVFQAEDALT EAYDKLRLSA YDALGAWRKT VRDAIGGLKA
201: SVDAGKQQAA GGVTDASGAL HEKVAGAGTV AVDVLRKAIV AAEDSLGSAA TFVVYSYGSA KESLPPNVRD LLSSSEEKAS LVLRPIGNAL QQVYVVVEGV
301: EKNVGLDPSD PIVQLAVVLG GSVTIGTTYW LFTYSGYSGD LSPESAFDLL KNDDKAVLID VRPEDLREKD GVPDLRLGAR SKYASVASPE IKDPVKSMLK
401: DEREFDDALL AVVIRNLKLV KGDSKVIVMD SNGARSKAIA RLLKKLGVQR PYLVKGGFQA WSKNLRVKEL KPETALTSIN EDVEEILEQI KPTPTLVFGS
501: LLGLSALSYA LLEWEMTLQY IAVLSVGLTI YLRFSTYEDS EDLEKDLKLL LSPVRVGADA LSWAAKKIEP NKVGLPTSPS TTAVKDRVLQ AAAKHESQPS
601: DADESSVQTA EA

Best Arabidopsis Sequence Match ( AT3G59780.1 )
(BLAST)

001: MFPLCSATSC RYHSQILFPG NWRGCSSFRR ELIHRYSSGD NAFFGISNGT RLQKSFVPQA TGSFLTGTIE KTEQPVSTFG SLCQNELDRI NYMVYNMSEA
101: FVASDEGLTY VENGEDVFPV EAVAADVSPV EAVVPDVSPI ECLSAETLTD KTSSLIDSVE SGTNATVKIS PDSSVSLPDA KASFDDFSSG LKQSFSSSLP
201: DAKASVDDFS SGVKESFSSS LNQGENAVKN TLESFSSSVT SITKNASEVV DSAVNRAFST LDQTGDVAGD KFSSFSTGLK EASNRAAVIA IDLLRQSVSL
301: GERSVTNGVS FVVYSYGSAK ELLPPDVKSA LNSSEDVALK VLSPVGAVLQ QVSVAIGGLE RNIGLDPDDP ILHLFLFVGT TGTFWVLYRV WTYGGYAGDL
401: SPKSTLDLLK SRDKSVLIDV RPEALREKDG IPDLRRSARF RYSSVTLPEV DGDVKRLLKG GSEVDDILTA VIIKNLKIVQ DRSKVVVMDA DGTRSKGIAR
501: ALRKVGIKRP YLMQGGYRSW VQEGLRVKEP KPETTLTILN EEAEAIFEDI NPSPLQLFGV GVGFFAALYA LSEWEKTLQL IAVIGLSLTI YLRLSSYDDS
601: EDFKQDVRLL LAPVKLGAQA FSWAAGKLET NGVGLPTSPS SSDVRSRVLQ AAAKHESKPS DETSESLQDA SSSPEEALNN VDVSEA

Arabidopsis Description

Rhodanese/Cell cycle control phosphatase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J9G2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.