Factsheet for Solyc03g059180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g00820.t01	Wine grape	plastid	49.44	40.68
KRH31574	Soybean	plastid	43.82	36.39
KRG97340	Soybean	plastid	44.19	36.31
CDX67812	Canola	plastid	42.32	33.98
AT3G59780.1	Thale cress	plastid	43.63	33.97
CDX98394	Canola	plastid	42.13	33.78
GSMUA_Achr8P32230_001	Banana	cytosol, plastid	18.35	33.56
Bra003389.1-P	Field mustard	plastid	42.51	32.99
HORVU3Hr1G089650.2	Barley	plastid	34.64	30.78
Os01t0896500-01	Rice	plasma membrane	35.77	30.66
EES04035	Sorghum	plastid	34.83	30.39
Zm00001d042526_P001	Maize	plastid	34.83	30.39
TraesCS3B01G430900.1	Wheat	plastid	34.08	30.38
TraesCS3D01G392600.1	Wheat	plastid	34.08	30.38
TraesCS3A01G398500.1	Wheat	plastid	33.71	30.05
GSMUA_Achr8P32240_001	Banana	plastid	21.16	28.18
Solyc03g114450.2.1	Tomato	plastid	10.11	13.78
Solyc03g059170.2.1	Tomato	nucleus, plastid	3.18	13.71

Protein Annotations

Gene3D:3.40.250.10	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	InterPro:IPR001763
InterPro:IPR036873	UniProt:K4BGW5	PFAM:PF00581	PFscan:PS50206	PANTHER:PTHR34209	PANTHER:PTHR34209:SF1
InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	SMART:SM00450	SUPFAM:SSF52821	EnsemblPlantsGene:Solyc03g059180.2	EnsemblPlants:Solyc03g059180.2.1
UniParc:UPI0002768EC0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:27856846..27865212

Molecular Weight (calculated)

57850.8 Da

IEP (calculated)

4.893

GRAVY (calculated)

-0.027

Length

534 amino acids

Sequence
(BLAST)

001: MATLPVCSAT ACSSSHSQIP FYGGLRSFSS CWKTYQLKCN VVDLSTSFHL NGPSFRGQSP IFLYSQFVQN SSLSSSSDSI CTSCQNVIYS VNRELLTSDA
101: RSNSTGNLKF VDSSAVPVGR EEMMGFNDDL VNIANFSPES ANLESITTVD LTQGNPASIL DSMDLETSSL SNVKSSALDV LSQVNKSITG SVENGQSYLN
201: SSLDGISSSV TSAVRGATQA VDDVISKLTS TVDKTGDSAG NGVAAFSTGL KEVSGRVGLL AIDGLRHIIL IFEDLVSRGA TLVVFSYGSV KEVLPMEVQD
301: LLNVSEERAV KLLTPFGTAL GQGYVALEGL ERSLGLDPSD PIIPFILFLG VSTAFWAFYW KLTYGGYAGD LSPKSSFELL KGDRKAVLID IRPEDLREKE
401: GIPDLRRAAR FRFANVTLPE IDGSTRKLFK SGRELDDYLL AAVIRNLKIV QDRSQVIVMD ADGNRSKGVA RSLRRLGIKR PYLVQGGFRS WVEEGLRIKE
501: LKPETTLTIL NEEAEAIFEE INPTPLQVVG YGVL

Best Arabidopsis Sequence Match ( AT3G59780.1 )
(BLAST)

001: MFPLCSATSC RYHSQILFPG NWRGCSSFRR ELIHRYSSGD NAFFGISNGT RLQKSFVPQA TGSFLTGTIE KTEQPVSTFG SLCQNELDRI NYMVYNMSEA
101: FVASDEGLTY VENGEDVFPV EAVAADVSPV EAVVPDVSPI ECLSAETLTD KTSSLIDSVE SGTNATVKIS PDSSVSLPDA KASFDDFSSG LKQSFSSSLP
201: DAKASVDDFS SGVKESFSSS LNQGENAVKN TLESFSSSVT SITKNASEVV DSAVNRAFST LDQTGDVAGD KFSSFSTGLK EASNRAAVIA IDLLRQSVSL
301: GERSVTNGVS FVVYSYGSAK ELLPPDVKSA LNSSEDVALK VLSPVGAVLQ QVSVAIGGLE RNIGLDPDDP ILHLFLFVGT TGTFWVLYRV WTYGGYAGDL
401: SPKSTLDLLK SRDKSVLIDV RPEALREKDG IPDLRRSARF RYSSVTLPEV DGDVKRLLKG GSEVDDILTA VIIKNLKIVQ DRSKVVVMDA DGTRSKGIAR
501: ALRKVGIKRP YLMQGGYRSW VQEGLRVKEP KPETTLTILN EEAEAIFEDI NPSPLQLFGV GVGFFAALYA LSEWEKTLQL IAVIGLSLTI YLRLSSYDDS
601: EDFKQDVRLL LAPVKLGAQA FSWAAGKLET NGVGLPTSPS SSDVRSRVLQ AAAKHESKPS DETSESLQDA SSSPEEALNN VDVSEA

Arabidopsis Description

Rhodanese/Cell cycle control phosphatase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J9G2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.