Factsheet for Solyc01g007520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28597	Canola	plastid	93.15	93.15
CDY47372	Canola	plastid	93.15	93.15
ATCG00710.1	Thale cress	plastid	91.78	91.78
CAA33976	Rice	cytosol	89.04	89.04
EES02991	Sorghum	cytosol, nucleus, plastid	83.56	83.56
GRMZM5G831399_P01	Maize	plastid	83.56	83.56
TraesCSU01G269100.1	Wheat	plastid	82.19	82.19
OQU86906	Sorghum	golgi, plastid	72.6	81.54
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	80.82	80.82
AGP50783	Barley	plastid	80.82	80.82
TraesCS3B01G187500.1	Wheat	cytosol	80.82	80.82
KRH65831	Soybean	plastid	80.82	80.82
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	80.82	80.82
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	80.82	80.82
TraesCSU01G035300.1	Wheat	cytosol	79.45	79.45
TraesCS5D01G559700.1	Wheat	cytosol	79.45	79.45
TraesCS3D01G029800.1	Wheat	cytosol	79.45	79.45
TraesCS1D01G182900.1	Wheat	cytosol	79.45	79.45
TraesCS1B01G082000.1	Wheat	cytosol	76.71	77.78
HORVU0Hr1G027540.1	Barley	cytosol, plastid	80.82	77.63
HORVU5Hr1G065030.1	Barley	cytosol, plastid	80.82	77.63
HORVU0Hr1G030700.1	Barley	cytosol, plastid	80.82	77.63
KXG23489	Sorghum	cytosol, plastid	78.08	77.03
TraesCS3D01G447200.1	Wheat	cytosol, golgi, plastid	75.34	76.39
TraesCS5D01G009200.1	Wheat	cytosol	80.82	75.64
TraesCS1A01G130300.1	Wheat	cytosol	75.34	75.34
TraesCS7D01G271300.1	Wheat	cytosol	75.34	75.34
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	75.34	75.34
KRH04778	Soybean	plastid	68.49	73.53
KXG23491	Sorghum	cytosol, plastid	73.97	72.97
TraesCS6B01G126500.1	Wheat	extracellular	73.97	70.13
HORVU7Hr1G065800.1	Barley	cytosol	71.23	68.42
TraesCS7A01G289800.1	Wheat	plasma membrane	68.49	65.79
TraesCS7A01G095600.1	Wheat	extracellular	64.38	63.51
KRH57910	Soybean	cytosol, extracellular, plastid	52.05	52.78
HORVU1Hr1G044400.1	Barley	cytosol	42.47	52.54
HORVU4Hr1G021930.1	Barley	plastid	41.1	50.85

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	UniProt:A0A0C5CEE1	ProteinID:ABC56328.1	ProteinID:AJO25139.1	ProteinID:AJY79051.1
ProteinID:ASR92449.1	ProteinID:ASR92536.1	ProteinID:CAJ32423.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042301	GO:GO:0050821	InterPro:IPR036863
HAMAP:MF_00752	PFAM:PD003584	PFAM:PF00737	InterPro:PSII_PsbH	InterPro:PSII_PsbH_sf	PANTHER:PTHR34469
PANTHER:PTHR34469:SF4	UniProt:Q2MI72	SUPFAM:SSF161025	EnsemblPlantsGene:Solyc01g007520.2	EnsemblPlants:Solyc01g007520.2.1	TMHMM:TMhelix
UniParc:UPI0000001698	:	:	:	:	:

Description

psbHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:Q2MI72]

Coordinates

chr1:+:1871661..1872371

Molecular Weight (calculated)

7759.5 Da

IEP (calculated)

6.666

GRAVY (calculated)

0.308

Length

73 amino acids

Sequence
(BLAST)

1: MATQTVENSS RSGPRRTAVG DLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SMN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.