CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23489	Sorghum	cytosol, plastid	95.95	95.95
OQU86906	Sorghum	golgi, plastid	78.38	89.23
EES02991	Sorghum	cytosol, nucleus, plastid	87.84	89.04
GRMZM5G831399_P01	Maize	plastid	87.84	89.04
TraesCS3B01G187500.1	Wheat	cytosol	86.49	87.67
TraesCSU01G269100.1	Wheat	plastid	85.14	86.3
TraesCS1D01G182900.1	Wheat	cytosol	85.14	86.3
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	83.78	84.93
AGP50783	Barley	plastid	83.78	84.93
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	83.78	84.93
TraesCS7D01G271300.1	Wheat	cytosol	83.78	84.93
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	83.78	84.93
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	83.78	84.93
TraesCS1B01G082000.1	Wheat	cytosol	82.43	84.72
TraesCS5D01G559700.1	Wheat	cytosol	82.43	83.56
TraesCS3D01G029800.1	Wheat	cytosol	82.43	83.56
TraesCSU01G035300.1	Wheat	cytosol	82.43	83.56
HORVU5Hr1G065030.1	Barley	cytosol, plastid	85.14	82.89
HORVU0Hr1G030700.1	Barley	cytosol, plastid	85.14	82.89
HORVU0Hr1G027540.1	Barley	cytosol, plastid	85.14	82.89
CAA33976	Rice	cytosol	81.08	82.19
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	79.73	80.82
TraesCS3D01G447200.1	Wheat	cytosol, golgi, plastid	78.38	80.56
TraesCS5D01G009200.1	Wheat	cytosol	83.78	79.49
TraesCS1A01G130300.1	Wheat	cytosol	77.03	78.08
ATCG00710.1	Thale cress	plastid	75.68	76.71
CDY28597	Canola	plastid	75.68	76.71
CDY47372	Canola	plastid	75.68	76.71
HORVU7Hr1G065800.1	Barley	cytosol	77.03	75.0
Solyc01g007520.2.1	Tomato	plastid	72.97	73.97
TraesCS6B01G126500.1	Wheat	extracellular	72.97	70.13
KRH65831	Soybean	plastid	68.92	69.86
TraesCS7A01G289800.1	Wheat	plasma membrane	67.57	65.79
TraesCS7A01G095600.1	Wheat	extracellular	60.81	60.81
KRH04778	Soybean	plastid	55.41	60.29
HORVU4Hr1G021930.1	Barley	plastid	45.95	57.63
HORVU1Hr1G044400.1	Barley	cytosol	39.19	49.15
KRH57910	Soybean	cytosol, extracellular, plastid	39.19	40.28

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	UniProt:A0A1B6PCU5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042301	GO:GO:0050821
InterPro:IPR036863	EnsemblPlants:KXG23491	ProteinID:KXG23491	ProteinID:KXG23491.1	HAMAP:MF_00752	PFAM:PD003584
PFAM:PF00737	InterPro:PSII_PsbH	InterPro:PSII_PsbH_sf	PANTHER:PTHR34469	PANTHER:PTHR34469:SF4	EnsemblPlantsGene:SORBI_3008G102300
SUPFAM:SSF161025	TMHMM:TMhelix	UniParc:UPI00081AB41E	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:48614103..48614327

Molecular Weight (calculated)

8048.9 Da

IEP (calculated)

6.496

GRAVY (calculated)

0.399

Length

74 amino acids

Sequence
(BLAST)

1: FVATQTIEDS SRPKPKQTGT GSLLKPLNLE YGKVAPCWGT TPFMGVAMTL FVIFLSIILE IYNSSVLLDG ILTN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.