Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 3
- extracellular 1
- golgi 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G126500.1 | Wheat | extracellular | 93.42 | 92.21 |
| TraesCS7A01G095600.1 | Wheat | extracellular | 81.58 | 83.78 |
| OQU86906 | Sorghum | golgi, plastid | 65.79 | 76.92 |
| EES02991 | Sorghum | cytosol, nucleus, plastid | 72.37 | 75.34 |
| GRMZM5G831399_P01 | Maize | plastid | 72.37 | 75.34 |
| TraesCS1A01G130300.1 | Wheat | cytosol | 69.74 | 72.6 |
| CAA33976 | Rice | cytosol | 67.11 | 69.86 |
| KXG23489 | Sorghum | cytosol, plastid | 67.11 | 68.92 |
| Solyc01g007520.2.1 | Tomato | plastid | 65.79 | 68.49 |
| KXG23491 | Sorghum | cytosol, plastid | 65.79 | 67.57 |
| CDY47372 | Canola | plastid | 64.47 | 67.12 |
| CDY28597 | Canola | plastid | 64.47 | 67.12 |
| ATCG00710.1 | Thale cress | plastid | 64.47 | 67.12 |
| KRH65831 | Soybean | plastid | 60.53 | 63.01 |
| KRH04778 | Soybean | plastid | 47.37 | 52.94 |
| HORVU4Hr1G021930.1 | Barley | plastid | 39.47 | 50.85 |
| HORVU1Hr1G044400.1 | Barley | cytosol | 39.47 | 50.85 |
| KRH57910 | Soybean | cytosol, extracellular, plastid | 32.89 | 34.72 |
Protein Annotations
| MapMan:1.1.1.2.3 | Gene3D:1.20.5.880 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0042301 | GO:GO:0050821 | InterPro:IPR036863 | PFAM:PD003584 |
| PFAM:PF00737 | InterPro:PSII_PsbH | InterPro:PSII_PsbH_sf | PANTHER:PTHR34469 | PANTHER:PTHR34469:SF4 | SUPFAM:SSF161025 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7A01G289800 | EnsemblPlants:TraesCS7A01G289800.1 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:352192510..352192859
Molecular Weight (calculated)
8499.4 Da
IEP (calculated)
4.455
GRAVY (calculated)
0.450
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MATEVDVSIF IEFQDYNGST KRSCSLLKPL NSEYGKVAPG WGTPFMRVAM ALFAIFLSII LEIYNYSILL DGILTN
1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN
Arabidopsis Description
PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.