Factsheet for GRMZM5G831399_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

plastid: 18453340
plastid: 20089766
plastid: 22065420
plastid: 22833285
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22833285 doi

R Fristedt, W Wasilewska, E Romanowska, AV Vener

Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02991	Sorghum	cytosol, nucleus, plastid	100.0	100.0
OQU86906	Sorghum	golgi, plastid	87.67	98.46
TraesCSU01G269100.1	Wheat	plastid	97.26	97.26
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	95.89	95.89
TraesCS3B01G187500.1	Wheat	cytosol	95.89	95.89
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	95.89	95.89
AGP50783	Barley	plastid	95.89	95.89
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	95.89	95.89
TraesCSU01G035300.1	Wheat	cytosol	94.52	94.52
TraesCS1D01G182900.1	Wheat	cytosol	94.52	94.52
TraesCS5D01G559700.1	Wheat	cytosol	94.52	94.52
TraesCS3D01G029800.1	Wheat	cytosol	94.52	94.52
HORVU5Hr1G065030.1	Barley	cytosol, plastid	95.89	92.11
HORVU0Hr1G030700.1	Barley	cytosol, plastid	95.89	92.11
HORVU0Hr1G027540.1	Barley	cytosol, plastid	95.89	92.11
KXG23489	Sorghum	cytosol, plastid	93.15	91.89
TraesCS3D01G447200.1	Wheat	cytosol, golgi, plastid	90.41	91.67
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	90.41	90.41
TraesCS7D01G271300.1	Wheat	cytosol	90.41	90.41
TraesCS1B01G082000.1	Wheat	cytosol	89.04	90.28
TraesCS5D01G009200.1	Wheat	cytosol	95.89	89.74
CAA33976	Rice	cytosol	89.04	89.04
TraesCS1A01G130300.1	Wheat	cytosol	89.04	89.04
KXG23491	Sorghum	cytosol, plastid	89.04	87.84
CDY28597	Canola	plastid	84.93	84.93
CDY47372	Canola	plastid	84.93	84.93
ATCG00710.1	Thale cress	plastid	84.93	84.93
Solyc01g007520.2.1	Tomato	plastid	83.56	83.56
HORVU7Hr1G065800.1	Barley	cytosol	86.3	82.89
TraesCS6B01G126500.1	Wheat	extracellular	80.82	76.62
KRH65831	Soybean	plastid	73.97	73.97
TraesCS7A01G289800.1	Wheat	plasma membrane	75.34	72.37
KRH04778	Soybean	plastid	63.01	67.65
TraesCS7A01G095600.1	Wheat	extracellular	68.49	67.57
HORVU4Hr1G021930.1	Barley	plastid	52.05	64.41
HORVU1Hr1G044400.1	Barley	cytosol	45.21	55.93
KRH57910	Soybean	cytosol, extracellular, plastid	46.58	47.22

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	EntrezGene:845205	ProteinID:CAA28998.1	ProteinID:CAA60314.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042301
GO:GO:0042651	GO:GO:0050821	EnsemblPlantsGene:GRMZM5G831399	EnsemblPlants:GRMZM5G831399_P01	EnsemblPlants:GRMZM5G831399_T01	InterPro:IPR036863
HAMAP:MF_00752	UniProt:P24993	PFAM:PD003584	PFAM:PF00737	InterPro:PSII_PsbH	InterPro:PSII_PsbH_sf
PANTHER:PTHR34469	PANTHER:PTHR34469:SF4	SUPFAM:SSF161025	TMHMM:TMhelix	UniParc:UPI00001638B5	:

Description

psbHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P24993]

Coordinates

chrPt:+:72774..73328

Molecular Weight (calculated)

7787.5 Da

IEP (calculated)

9.079

GRAVY (calculated)

0.249

Length

73 amino acids

Sequence
(BLAST)

1: MATQTVEDSS RPKPKRTGAG SLLKPLNSEY GKVAPGWGTT PFMGVAMALF AIFLSIILEI YNSSVLLDGI LTN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.