Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G269100.1 | Wheat | plastid | 92.31 | 98.63 |
| TraesCS5D01G559700.1 | Wheat | cytosol | 92.31 | 98.63 |
| TraesCS3D01G029800.1 | Wheat | cytosol | 92.31 | 98.63 |
| TraesCS1D01G182900.1 | Wheat | cytosol | 92.31 | 98.63 |
| HORVU0Hr1G037910.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| TraesCS3B01G187500.1 | Wheat | cytosol | 91.03 | 97.26 |
| HORVU6Hr1G049410.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU6Hr1G037230.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU2Hr1G048390.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| AGP50783 | Barley | plastid | 91.03 | 97.26 |
| HORVU0Hr1G037400.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G036960.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G035170.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G034460.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G033730.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G032950.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G029930.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G028390.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G033460.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G026830.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G026170.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| HORVU0Hr1G024680.1 | Barley | cytosol, nucleus, plastid | 91.03 | 97.26 |
| GRMZM5G831399_P01 | Maize | plastid | 89.74 | 95.89 |
| EES02991 | Sorghum | cytosol, nucleus, plastid | 89.74 | 95.89 |
| OQU86906 | Sorghum | golgi, plastid | 78.21 | 93.85 |
| HORVU5Hr1G065030.1 | Barley | cytosol, plastid | 91.03 | 93.42 |
| HORVU0Hr1G027540.1 | Barley | cytosol, plastid | 91.03 | 93.42 |
| HORVU0Hr1G030700.1 | Barley | cytosol, plastid | 91.03 | 93.42 |
| TraesCS4D01G043300.1 | Wheat | cytosol, golgi, plastid | 87.18 | 93.15 |
| TraesCS3D01G447200.1 | Wheat | cytosol, golgi, plastid | 85.9 | 93.06 |
| TraesCS7D01G271300.1 | Wheat | cytosol | 85.9 | 91.78 |
| KXG23489 | Sorghum | cytosol, plastid | 83.33 | 87.84 |
| CAA33976 | Rice | cytosol | 80.77 | 86.3 |
| HORVU7Hr1G065800.1 | Barley | cytosol | 82.05 | 84.21 |
| KXG23491 | Sorghum | cytosol, plastid | 79.49 | 83.78 |
| ATCG00710.1 | Thale cress | plastid | 76.92 | 82.19 |
| CDY28597 | Canola | plastid | 76.92 | 82.19 |
| CDY47372 | Canola | plastid | 76.92 | 82.19 |
| Solyc01g007520.2.1 | Tomato | plastid | 75.64 | 80.82 |
| KRH65831 | Soybean | plastid | 67.95 | 72.6 |
| KRH04778 | Soybean | plastid | 56.41 | 64.71 |
| KRH57910 | Soybean | cytosol, extracellular, plastid | 42.31 | 45.83 |
Protein Annotations
| MapMan:1.1.1.2.3 | Gene3D:1.20.5.880 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0042301 | GO:GO:0050821 | InterPro:IPR036863 | HAMAP:MF_00752 |
| PFAM:PD003584 | PFAM:PF00737 | InterPro:PSII_PsbH | InterPro:PSII_PsbH_sf | PANTHER:PTHR34469 | PANTHER:PTHR34469:SF4 |
| SUPFAM:SSF161025 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5D01G009200 | EnsemblPlants:TraesCS5D01G009200.1 | : | : |
Description
No Description!
Coordinates
chr5D:-:6199751..6199987
Molecular Weight (calculated)
8366.2 Da
IEP (calculated)
9.001
GRAVY (calculated)
0.210
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MATQTVEDSS KPRPKRTGAG SLLKPLNSEY GKVAPGWGTT PFMGIAMALF AIFLSIILEI YNSSVLLDGI LTNYVSTN
1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN
Arabidopsis Description
PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.