Factsheet for TraesCS5D01G559700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G035300.1	Wheat	cytosol	97.26	97.26
TraesCS3D01G029800.1	Wheat	cytosol	97.26	97.26
TraesCS1D01G182900.1	Wheat	cytosol	97.26	97.26
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	95.89	95.89
AGP50783	Barley	plastid	95.89	95.89
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	95.89	95.89
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	95.89	95.89
GRMZM5G831399_P01	Maize	plastid	94.52	94.52
EES02991	Sorghum	cytosol, nucleus, plastid	94.52	94.52
OQU86906	Sorghum	golgi, plastid	82.19	92.31
TraesCS5D01G009200.1	Wheat	cytosol	98.63	92.31
HORVU0Hr1G030700.1	Barley	cytosol, plastid	95.89	92.11
HORVU5Hr1G065030.1	Barley	cytosol, plastid	95.89	92.11
HORVU0Hr1G027540.1	Barley	cytosol, plastid	95.89	92.11
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	91.78	91.78
TraesCS3D01G447200.1	Wheat	cytosol, golgi, plastid	90.41	91.67
TraesCS1B01G082000.1	Wheat	cytosol	90.41	91.67
TraesCS7D01G271300.1	Wheat	cytosol	90.41	90.41
KXG23489	Sorghum	cytosol, plastid	87.67	86.49
CAA33976	Rice	cytosol	84.93	84.93
HORVU7Hr1G065800.1	Barley	cytosol	86.3	82.89
KXG23491	Sorghum	cytosol, plastid	83.56	82.43
ATCG00710.1	Thale cress	plastid	80.82	80.82
CDY28597	Canola	plastid	80.82	80.82
CDY47372	Canola	plastid	80.82	80.82
Solyc01g007520.2.1	Tomato	plastid	79.45	79.45
KRH65831	Soybean	plastid	71.23	71.23
KRH04778	Soybean	plastid	58.9	63.24
KRH57910	Soybean	cytosol, extracellular, plastid	43.84	44.44

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0042301	GO:GO:0050821	InterPro:IPR036863	HAMAP:MF_00752
PFAM:PD003584	PFAM:PF00737	InterPro:PSII_PsbH	InterPro:PSII_PsbH_sf	PANTHER:PTHR34469	PANTHER:PTHR34469:SF4
SUPFAM:SSF161025	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G559700	EnsemblPlants:TraesCS5D01G559700.1	:	:

Description

No Description!

Coordinates

chr5D:+:560873763..560873984

Molecular Weight (calculated)

7860.6 Da

IEP (calculated)

9.811

GRAVY (calculated)

0.214

Length

73 amino acids

Sequence
(BLAST)

1: MATQTVEDSS KPRPKRTGAG SLLKRLNSEY GKVAPGWGTT PFMGIAMALF AIFLSIILEI YNSSVLLDGI LTN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.