Subcellular Localization
min:
: max
Winner_takes_all: cytosol, golgi, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G269100.1 | Wheat | plastid | 91.78 | 91.78 |
| TraesCS5D01G559700.1 | Wheat | cytosol | 91.78 | 91.78 |
| TraesCS3D01G029800.1 | Wheat | cytosol | 91.78 | 91.78 |
| TraesCS3B01G187500.1 | Wheat | cytosol | 91.78 | 91.78 |
| TraesCS1D01G182900.1 | Wheat | cytosol | 91.78 | 91.78 |
| HORVU0Hr1G037910.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU6Hr1G049410.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU6Hr1G037230.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU2Hr1G048390.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| AGP50783 | Barley | plastid | 90.41 | 90.41 |
| HORVU0Hr1G037400.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G036960.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G035170.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G034460.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G033730.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G032950.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| EES02991 | Sorghum | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G033460.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| GRMZM5G831399_P01 | Maize | plastid | 90.41 | 90.41 |
| HORVU0Hr1G024680.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G026170.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G026830.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G028390.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| HORVU0Hr1G029930.1 | Barley | cytosol, nucleus, plastid | 90.41 | 90.41 |
| OQU86906 | Sorghum | golgi, plastid | 78.08 | 87.69 |
| TraesCS5D01G009200.1 | Wheat | cytosol | 93.15 | 87.18 |
| HORVU0Hr1G027540.1 | Barley | cytosol, plastid | 90.41 | 86.84 |
| HORVU5Hr1G065030.1 | Barley | cytosol, plastid | 90.41 | 86.84 |
| HORVU0Hr1G030700.1 | Barley | cytosol, plastid | 90.41 | 86.84 |
| TraesCS7D01G271300.1 | Wheat | cytosol | 86.3 | 86.3 |
| TraesCS3D01G447200.1 | Wheat | cytosol, golgi, plastid | 84.93 | 86.11 |
| KXG23489 | Sorghum | cytosol, plastid | 84.93 | 83.78 |
| CAA33976 | Rice | cytosol | 80.82 | 80.82 |
| KXG23491 | Sorghum | cytosol, plastid | 80.82 | 79.73 |
| HORVU7Hr1G065800.1 | Barley | cytosol | 80.82 | 77.63 |
| ATCG00710.1 | Thale cress | plastid | 76.71 | 76.71 |
| CDY28597 | Canola | plastid | 76.71 | 76.71 |
| CDY47372 | Canola | plastid | 76.71 | 76.71 |
| Solyc01g007520.2.1 | Tomato | plastid | 75.34 | 75.34 |
| KRH65831 | Soybean | plastid | 67.12 | 67.12 |
| KRH04778 | Soybean | plastid | 56.16 | 60.29 |
| KRH57910 | Soybean | cytosol, extracellular, plastid | 42.47 | 43.06 |
Protein Annotations
| MapMan:1.1.1.2.3 | Gene3D:1.20.5.880 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0042301 | GO:GO:0050821 | InterPro:IPR036863 | HAMAP:MF_00752 |
| PFAM:PD003584 | PFAM:PF00737 | InterPro:PSII_PsbH | InterPro:PSII_PsbH_sf | PANTHER:PTHR34469 | PANTHER:PTHR34469:SF4 |
| SUPFAM:SSF161025 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4D01G043300 | EnsemblPlants:TraesCS4D01G043300.1 | : | : |
Description
No Description!
Coordinates
chr4D:+:19917788..19918009
Molecular Weight (calculated)
7746.5 Da
IEP (calculated)
6.645
GRAVY (calculated)
0.330
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MATQTVEDSS KPSPKRTGAG SLLKPLNSEY GKVALGWGTS PFMGIAMPLF AIFLSIILDI YNSSVLLDGI LTN
1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN
Arabidopsis Description
PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.