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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plastid
plastid: 16758444
plastid: 19137553
plastid: 21440687
msms PMID: 16758444 doi
B Granvogl, V Reisinger, LA Eichacker
Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.
msms PMID: 19137553 doi
M Plöscher, B Granvogl, M Zoryan, V Reisinger, LA Eichacker
Ludwig-Maximilians-Universität, Biozentrum der LMU Biologie, Planegg-Martinsried, Germany.
msms PMID: 21440687 doi
M Plöscher, V Reisinger, LA Eichacker
TRION Pharma GmbH, Munich, Germany.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G026830.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G034460.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G033730.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G033460.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G032950.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G035170.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G029930.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G028390.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G036960.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G026170.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G024680.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G037400.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU0Hr1G037910.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU2Hr1G048390.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU6Hr1G037230.1 Barley cytosol, nucleus, plastid 100.0 100.0
HORVU6Hr1G049410.1 Barley cytosol, nucleus, plastid 100.0 100.0
TraesCSU01G269100.1 Wheat plastid 98.63 98.63
TraesCS3B01G187500.1 Wheat cytosol 97.26 97.26
HORVU0Hr1G027540.1 Barley cytosol, plastid 100.0 96.05
HORVU0Hr1G030700.1 Barley cytosol, plastid 100.0 96.05
HORVU5Hr1G065030.1 Barley cytosol, plastid 100.0 96.05
GRMZM5G831399_P01 Maize plastid 95.89 95.89
EES02991 Sorghum cytosol, nucleus, plastid 95.89 95.89
TraesCS5D01G559700.1 Wheat cytosol 95.89 95.89
TraesCSU01G035300.1 Wheat cytosol 95.89 95.89
TraesCS1D01G182900.1 Wheat cytosol 95.89 95.89
TraesCS3D01G029800.1 Wheat cytosol 95.89 95.89
TraesCS7D01G271300.1 Wheat cytosol 94.52 94.52
OQU86906 Sorghum golgi, plastid 83.56 93.85
TraesCS1A01G130300.1 Wheat cytosol 93.15 93.15
TraesCS3D01G447200.1 Wheat cytosol, golgi, plastid 91.78 93.06
TraesCS1B01G082000.1 Wheat cytosol 90.41 91.67
TraesCS5D01G009200.1 Wheat cytosol 97.26 91.03
TraesCS4D01G043300.1 Wheat cytosol, golgi, plastid 90.41 90.41
KXG23489 Sorghum cytosol, plastid 89.04 87.84
HORVU7Hr1G065800.1 Barley cytosol 90.41 86.84
CAA33976 Rice cytosol 86.3 86.3
KXG23491 Sorghum cytosol, plastid 84.93 83.78
CDY47372 Canola plastid 82.19 82.19
CDY28597 Canola plastid 82.19 82.19
ATCG00710.1 Thale cress plastid 82.19 82.19
Solyc01g007520.2.1 Tomato plastid 80.82 80.82
KRH65831 Soybean plastid 75.34 75.34
KRH04778 Soybean plastid 61.64 66.18
HORVU4Hr1G021930.1 Barley plastid 52.05 64.41
HORVU1Hr1G044400.1 Barley cytosol 45.21 55.93
KRH57910 Soybean cytosol, extracellular, plastid 45.21 45.83
Protein Annotations
MapMan:1.1.1.2.3Gene3D:1.20.5.880EntrezGene:4525078EnsemblPlants:AGP50783EnsemblPlantsGene:AGP50783ProteinID:AGP50783
ProteinID:AGP50783.1ProteinID:AMA20274.1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009523
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0042301GO:GO:0050821InterPro:IPR036863ENA:KC912687.1:CDS:70947..71168HAMAP:MF_00752
PFAM:PD003584PFAM:PF00737InterPro:PSII_PsbHInterPro:PSII_PsbH_sfPANTHER:PTHR34469PANTHER:PTHR34469:SF4
GO:S4Z8A5UniProt:S4Z8A5SUPFAM:SSF161025TMHMM:TMhelixUniParc:UPI000016D393RefSeq:YP_874681.1
Description
psbHphotosystem II phosphoprotein
Coordinates
chrPt:+:70947..71168
Molecular Weight (calculated)
7801.6 Da
IEP (calculated)
9.079
GRAVY (calculated)
0.253
Length
73 amino acids
Sequence
(BLAST)
1: MATQTVEDSS KPRPKRTGAG SLLKPLNSEY GKVAPGWGTT PFMGVAMALF AIFLSIILEI YNSSILLDGI LTN
Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)
1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN
Arabidopsis Description
PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.