CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28597	Canola	plastid	91.78	91.78
CDY47372	Canola	plastid	91.78	91.78
ATCG00710.1	Thale cress	plastid	90.41	90.41
EES02991	Sorghum	cytosol, nucleus, plastid	89.04	89.04
GRMZM5G831399_P01	Maize	plastid	89.04	89.04
Solyc01g007520.2.1	Tomato	plastid	89.04	89.04
TraesCSU01G269100.1	Wheat	plastid	87.67	87.67
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	86.3	86.3
AGP50783	Barley	plastid	86.3	86.3
TraesCS3B01G187500.1	Wheat	cytosol	86.3	86.3
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	86.3	86.3
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	86.3	86.3
OQU86906	Sorghum	golgi, plastid	76.71	86.15
TraesCS1B01G082000.1	Wheat	cytosol	84.93	86.11
KXG23489	Sorghum	cytosol, plastid	86.3	85.14
TraesCS5D01G559700.1	Wheat	cytosol	84.93	84.93
TraesCSU01G035300.1	Wheat	cytosol	84.93	84.93
TraesCS1D01G182900.1	Wheat	cytosol	84.93	84.93
TraesCS3D01G029800.1	Wheat	cytosol	84.93	84.93
HORVU0Hr1G030700.1	Barley	cytosol, plastid	86.3	82.89
HORVU5Hr1G065030.1	Barley	cytosol, plastid	86.3	82.89
HORVU0Hr1G027540.1	Barley	cytosol, plastid	86.3	82.89
TraesCS3D01G447200.1	Wheat	cytosol, golgi, plastid	80.82	81.94
KXG23491	Sorghum	cytosol, plastid	82.19	81.08
TraesCS1A01G130300.1	Wheat	cytosol	80.82	80.82
TraesCS7D01G271300.1	Wheat	cytosol	80.82	80.82
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	80.82	80.82
TraesCS5D01G009200.1	Wheat	cytosol	86.3	80.77
KRH65831	Soybean	plastid	76.71	76.71
HORVU7Hr1G065800.1	Barley	cytosol	76.71	73.68
TraesCS6B01G126500.1	Wheat	extracellular	75.34	71.43
KRH04778	Soybean	plastid	65.75	70.59
TraesCS7A01G289800.1	Wheat	plasma membrane	69.86	67.11
TraesCS7A01G095600.1	Wheat	extracellular	64.38	63.51
HORVU1Hr1G044400.1	Barley	cytosol	45.21	55.93
HORVU4Hr1G021930.1	Barley	plastid	43.84	54.24
KRH57910	Soybean	cytosol, extracellular, plastid	49.32	50.0

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	EntrezGene:29141400	EntrezGene:3131415	ProteinID:AAS46139.1	ProteinID:AJC99342.1
ProteinID:AJC99431.1	ProteinID:BAD05520.1	ProteinID:BAD22296.1	ProteinID:BAD34136.1	ProteinID:CAA31204.1	EnsemblPlants:CAA33976
EnsemblPlantsGene:CAA33976	ProteinID:CAA33976	ProteinID:CAA33976.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042301	GO:GO:0050821	InterPro:IPR036863
HAMAP:MF_00752	RefSeq:NP_039414.1	UniProt:P0C422	PFAM:PD003584	PFAM:PF00737	InterPro:PSII_PsbH
InterPro:PSII_PsbH_sf	PANTHER:PTHR34469	PANTHER:PTHR34469:SF4	UniProt:Q6Z506	SUPFAM:SSF161025	TMHMM:TMhelix
UniParc:UPI00001638C0	RefSeq:YP_009305332.1	:	:	:	:

Description

psbHPSII 10kDa phosphoprotein

Coordinates

chrPt:+:70881..71102

Molecular Weight (calculated)

7886.7 Da

IEP (calculated)

6.666

GRAVY (calculated)

0.274

Length

73 amino acids

Sequence
(BLAST)

1: MATQTVEDSS RPGPRQTRVG NLLKPLNSEY GKVAPGWGTT PFMGVAMALF AVFLSIILEI YNSSVLLDGI LMN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.