Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G126500.1 | Wheat | extracellular | 91.89 | 88.31 |
| TraesCS7A01G289800.1 | Wheat | plasma membrane | 83.78 | 81.58 |
| OQU86906 | Sorghum | golgi, plastid | 63.51 | 72.31 |
| EES02991 | Sorghum | cytosol, nucleus, plastid | 67.57 | 68.49 |
| GRMZM5G831399_P01 | Maize | plastid | 67.57 | 68.49 |
| TraesCS1A01G130300.1 | Wheat | cytosol | 64.86 | 65.75 |
| CAA33976 | Rice | cytosol | 63.51 | 64.38 |
| Solyc01g007520.2.1 | Tomato | plastid | 63.51 | 64.38 |
| CDY47372 | Canola | plastid | 62.16 | 63.01 |
| CDY28597 | Canola | plastid | 62.16 | 63.01 |
| ATCG00710.1 | Thale cress | plastid | 62.16 | 63.01 |
| KXG23489 | Sorghum | cytosol, plastid | 62.16 | 62.16 |
| KXG23491 | Sorghum | cytosol, plastid | 60.81 | 60.81 |
| KRH65831 | Soybean | plastid | 55.41 | 56.16 |
| KRH04778 | Soybean | plastid | 50.0 | 54.41 |
| HORVU4Hr1G021930.1 | Barley | plastid | 41.89 | 52.54 |
| HORVU1Hr1G044400.1 | Barley | cytosol | 39.19 | 49.15 |
| KRH57910 | Soybean | cytosol, extracellular, plastid | 35.14 | 36.11 |
Protein Annotations
| MapMan:1.1.1.2.3 | Gene3D:1.20.5.880 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0042301 | GO:GO:0050821 | InterPro:IPR036863 | PFAM:PD003584 |
| PFAM:PF00737 | InterPro:PSII_PsbH | InterPro:PSII_PsbH_sf | PANTHER:PTHR34469 | PANTHER:PTHR34469:SF4 | SUPFAM:SSF161025 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7A01G095600 | EnsemblPlants:TraesCS7A01G095600.1 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:58647316..58647654
Molecular Weight (calculated)
8295.1 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.459
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MATKVVVSIF IEFQDYNGST KRSCSLLKPL NSEYGKVAPG WGTTPFMGIA MALFAIFLSI ILEIYNSSVY WTEF
1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN
Arabidopsis Description
PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.