CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28597	Canola	plastid	100.0	100.0
ATCG00710.1	Thale cress	plastid	98.63	98.63
Solyc01g007520.2.1	Tomato	plastid	93.15	93.15
CAA33976	Rice	cytosol	91.78	91.78
EES02991	Sorghum	cytosol, nucleus, plastid	84.93	84.93
GRMZM5G831399_P01	Maize	plastid	84.93	84.93
TraesCSU01G269100.1	Wheat	plastid	83.56	83.56
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	82.19	82.19
AGP50783	Barley	plastid	82.19	82.19
TraesCS3B01G187500.1	Wheat	cytosol	82.19	82.19
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	82.19	82.19
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	82.19	82.19
OQU86906	Sorghum	golgi, plastid	72.6	81.54
TraesCSU01G035300.1	Wheat	cytosol	80.82	80.82
TraesCS5D01G559700.1	Wheat	cytosol	80.82	80.82
TraesCS3D01G029800.1	Wheat	cytosol	80.82	80.82
TraesCS1D01G182900.1	Wheat	cytosol	80.82	80.82
KRH65831	Soybean	plastid	80.82	80.82
TraesCS1B01G082000.1	Wheat	cytosol	79.45	80.56
KXG23489	Sorghum	cytosol, plastid	80.82	79.73
HORVU5Hr1G065030.1	Barley	cytosol, plastid	82.19	78.95
HORVU0Hr1G030700.1	Barley	cytosol, plastid	82.19	78.95
HORVU0Hr1G027540.1	Barley	cytosol, plastid	82.19	78.95
TraesCS3D01G447200.1	Wheat	cytosol, golgi, plastid	76.71	77.78
TraesCS5D01G009200.1	Wheat	cytosol	82.19	76.92
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	76.71	76.71
TraesCS7D01G271300.1	Wheat	cytosol	76.71	76.71
TraesCS1A01G130300.1	Wheat	cytosol	76.71	76.71
KXG23491	Sorghum	cytosol, plastid	76.71	75.68
KRH04778	Soybean	plastid	68.49	73.53
HORVU7Hr1G065800.1	Barley	cytosol	72.6	69.74
TraesCS6B01G126500.1	Wheat	extracellular	72.6	68.83
TraesCS7A01G289800.1	Wheat	plasma membrane	67.12	64.47
TraesCS7A01G095600.1	Wheat	extracellular	63.01	62.16
HORVU1Hr1G044400.1	Barley	cytosol	43.84	54.24
KRH57910	Soybean	cytosol, extracellular, plastid	52.05	52.78
HORVU4Hr1G021930.1	Barley	plastid	41.1	50.85

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	ProteinID:ACY66234.1	ProteinID:AIK29033.1	ProteinID:AIZ06109.1	ProteinID:AKD00118.1
ProteinID:ASY95043.1	ProteinID:CDY28597.1	EnsemblPlants:CDY47372	ProteinID:CDY47372	ProteinID:CDY47372.1	GO:D1L8R7
UniProt:D1L8R7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009523	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0042301
GO:GO:0042651	GO:GO:0050821	EnsemblPlantsGene:GSBRNA2T00087265001	InterPro:IPR036863	HAMAP:MF_00752	PFAM:PD003584
PFAM:PF00737	InterPro:PSII_PsbH	InterPro:PSII_PsbH_sf	PANTHER:PTHR34469	PANTHER:PTHR34469:SF4	SUPFAM:SSF161025
TMHMM:TMhelix	UniParc:UPI0000F6E4CF	:	:	:	:

Description

BnaC04g24910DPhotosystem II reaction center protein H [Source:UniProtKB/TrEMBL;Acc:D1L8R7]

Coordinates

chrLK032713:-:26456..26677

Molecular Weight (calculated)

7734.5 Da

IEP (calculated)

6.665

GRAVY (calculated)

0.319

Length

73 amino acids

Sequence
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SMN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.