Factsheet for TraesCSU01G269100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

plastid: 18071923
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G026830.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G035170.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G034460.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G033730.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G033460.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G032950.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G036960.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G029930.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G028390.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G037400.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G026170.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G024680.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU0Hr1G037910.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU2Hr1G048390.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU6Hr1G037230.1	Barley	cytosol, nucleus, plastid	98.63	98.63
HORVU6Hr1G049410.1	Barley	cytosol, nucleus, plastid	98.63	98.63
TraesCS3B01G187500.1	Wheat	cytosol	98.63	98.63
AGP50783	Barley	plastid	98.63	98.63
TraesCSU01G035300.1	Wheat	cytosol	97.26	97.26
GRMZM5G831399_P01	Maize	plastid	97.26	97.26
EES02991	Sorghum	cytosol, nucleus, plastid	97.26	97.26
OQU86906	Sorghum	golgi, plastid	84.93	95.38
HORVU0Hr1G027540.1	Barley	cytosol, plastid	98.63	94.74
HORVU5Hr1G065030.1	Barley	cytosol, plastid	98.63	94.74
HORVU0Hr1G030700.1	Barley	cytosol, plastid	98.63	94.74
TraesCS7D01G271300.1	Wheat	cytosol	93.15	93.15
TraesCS5D01G009200.1	Wheat	cytosol	98.63	92.31
TraesCS4D01G043300.1	Wheat	cytosol, golgi, plastid	91.78	91.78
KXG23489	Sorghum	cytosol, plastid	90.41	89.19
CAA33976	Rice	cytosol	87.67	87.67
HORVU7Hr1G065800.1	Barley	cytosol	89.04	85.53
KXG23491	Sorghum	cytosol, plastid	86.3	85.14
ATCG00710.1	Thale cress	plastid	83.56	83.56
CDY28597	Canola	plastid	83.56	83.56
CDY47372	Canola	plastid	83.56	83.56
Solyc01g007520.2.1	Tomato	plastid	82.19	82.19
KRH65831	Soybean	plastid	73.97	73.97
KRH04778	Soybean	plastid	61.64	66.18
KRH57910	Soybean	cytosol, extracellular, plastid	45.21	45.83

Protein Annotations

MapMan:1.1.1.2.3	Gene3D:1.20.5.880	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0042301	GO:GO:0050821	InterPro:IPR036863	HAMAP:MF_00752
PFAM:PD003584	PFAM:PF00737	InterPro:PSII_PsbH	InterPro:PSII_PsbH_sf	PANTHER:PTHR34469	PANTHER:PTHR34469:SF4
SUPFAM:SSF161025	TMHMM:TMhelix	EnsemblPlantsGene:TraesCSU01G269100	EnsemblPlants:TraesCSU01G269100.1	:	:

Description

No Description!

Coordinates

chrUn:-:445811547..445811768

Molecular Weight (calculated)

7787.5 Da

IEP (calculated)

9.079

GRAVY (calculated)

0.249

Length

73 amino acids

Sequence
(BLAST)

1: MATQTVEDSS KPRPKRTGAG SLLKPLNSEY GKVAPGWGTT PFMGVAMALF AIFLSIILEI YNSSVLLDGI LTN

Best Arabidopsis Sequence Match ( ATCG00710.1 )
(BLAST)

1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN

Arabidopsis Description

PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.