Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AGP50783 | Barley | plastid | 93.06 | 91.78 |
| HORVU6Hr1G049410.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU6Hr1G037230.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU2Hr1G048390.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G037910.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G037400.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G036960.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G035170.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G034460.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G033730.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G033460.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G032950.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G029930.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G028390.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G026830.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G026170.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| HORVU0Hr1G024680.1 | Barley | cytosol, nucleus, plastid | 93.06 | 91.78 |
| OQU86906 | Sorghum | golgi, plastid | 81.94 | 90.77 |
| GRMZM5G831399_P01 | Maize | plastid | 91.67 | 90.41 |
| EES02991 | Sorghum | cytosol, nucleus, plastid | 91.67 | 90.41 |
| TraesCS1D01G182900.1 | Wheat | cytosol | 91.67 | 90.41 |
| TraesCS3D01G029800.1 | Wheat | cytosol | 91.67 | 90.41 |
| TraesCS5D01G559700.1 | Wheat | cytosol | 91.67 | 90.41 |
| TraesCS1B01G082000.1 | Wheat | cytosol | 88.89 | 88.89 |
| HORVU0Hr1G030700.1 | Barley | cytosol, plastid | 93.06 | 88.16 |
| HORVU0Hr1G027540.1 | Barley | cytosol, plastid | 93.06 | 88.16 |
| HORVU5Hr1G065030.1 | Barley | cytosol, plastid | 93.06 | 88.16 |
| TraesCS7D01G271300.1 | Wheat | cytosol | 87.5 | 86.3 |
| TraesCS5D01G009200.1 | Wheat | cytosol | 93.06 | 85.9 |
| TraesCS4D01G043300.1 | Wheat | cytosol, golgi, plastid | 86.11 | 84.93 |
| KXG23489 | Sorghum | cytosol, plastid | 84.72 | 82.43 |
| CAA33976 | Rice | cytosol | 81.94 | 80.82 |
| HORVU7Hr1G065800.1 | Barley | cytosol | 83.33 | 78.95 |
| KXG23491 | Sorghum | cytosol, plastid | 80.56 | 78.38 |
| CDY47372 | Canola | plastid | 77.78 | 76.71 |
| CDY28597 | Canola | plastid | 77.78 | 76.71 |
| ATCG00710.1 | Thale cress | plastid | 77.78 | 76.71 |
| Solyc01g007520.2.1 | Tomato | plastid | 76.39 | 75.34 |
| KRH65831 | Soybean | plastid | 68.06 | 67.12 |
| KRH04778 | Soybean | plastid | 56.94 | 60.29 |
| KRH57910 | Soybean | cytosol, extracellular, plastid | 41.67 | 41.67 |
Protein Annotations
| MapMan:1.1.1.2.3 | Gene3D:1.20.5.880 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009523 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0042301 | GO:GO:0050821 | InterPro:IPR036863 | PFAM:PD003584 |
| PFAM:PF00737 | InterPro:PSII_PsbH | InterPro:PSII_PsbH_sf | PANTHER:PTHR34469 | PANTHER:PTHR34469:SF4 | SUPFAM:SSF161025 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3D01G447200 | EnsemblPlants:TraesCS3D01G447200.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:555757564..555757783
Molecular Weight (calculated)
7942.8 Da
IEP (calculated)
9.810
GRAVY (calculated)
0.104
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MATQTVEDSS KPRPKRSGAG SLLKPLNSEY RKVAPGWGTP FMRVAMALFA IFLSIILEIY NSSVLLDEIL TN
1: MATQTVEDSS RSGPRSTTVG KLLKPLNSEY GKVAPGWGTT PLMGVAMALF AVFLSIILEI YNSSVLLDGI SVN
Arabidopsis Description
PSBHPhotosystem II reaction center protein H [Source:UniProtKB/Swiss-Prot;Acc:P56780]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.