Factsheet for Solyc01g091580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc02g087400.1.1
Solyc03g113740.2.1
Solyc09g009940.2.1
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	Solyc11g066110.1.1	AT2G28800.1	14517205
AT2G45770.1	Solyc02g087400.1.1	AT2G47450.1	14517205
AT2G45770.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT2G45770.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT2G45770.1	Solyc09g009940.2.1	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071384	Potato	plastid	98.64	98.64
VIT_15s0048g02080.t01	Wine grape	plastid	80.98	81.2
KRH65131	Soybean	plastid	79.35	78.49
KRH48224	Soybean	plastid	79.08	78.23
CDY18901	Canola	plastid	76.09	77.56
CDX74765	Canola	plastid	76.9	76.9
Bra004937.1-P	Field mustard	plastid	76.63	76.63
AT2G45770.1	Thale cress	plastid	75.82	76.23
CDY37064	Canola	plastid	75.82	75.82
Bra039315.1-P	Field mustard	plastid	64.4	75.24
CDY27360	Canola	plastid	74.73	74.93
GSMUA_Achr11P...	Banana	plastid	77.45	74.61
TraesCS3B01G561300.1	Wheat	plastid	71.47	73.67
TraesCSU01G058200.1	Wheat	plastid	71.74	73.33
TraesCS3A01G498300.1	Wheat	plastid	70.92	72.7
Os01t0958100-01	Rice	plastid	70.11	71.07
EES04254	Sorghum	plastid	70.65	71.04
HORVU3Hr1G110160.4	Barley	mitochondrion	71.74	66.17
Zm00001d042044_P001	Maize	plastid	70.11	60.14
Solyc09g009940.2.1	Tomato	plastid	25.82	16.75
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	26.9	15.99
Solyc12g042740.1.1	Tomato	cytosol	21.47	15.83
Solyc03g116810.2.1	Tomato	nucleus	21.74	13.56

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.1.7.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	UniProt:K4AZ98	HAMAP:MF_00920	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364	SUPFAM:SSF52540
InterPro:Signal_recog_particl_SRP54_hlx	EnsemblPlantsGene:Solyc01g091580.2	EnsemblPlants:Solyc01g091580.2.1	TIGRFAMs:TIGR00064	UniParc:UPI00027683BD	SEG:seg

Description

Cell division protein FtsY homolog, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G45770) UniProtKB/Swiss-Prot;Acc:O80842]

Coordinates

chr1:-:85173296..85178915

Molecular Weight (calculated)

39867.4 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.004

Length

368 amino acids

Sequence
(BLAST)

001: MASTLSSRLP RLPSKTVFPH SNSGSTLLHF TSKTRFDQSR FRCSAGQTGF FTKLGRLLKE KAKSDVEKLF SGFSKTRDNL AVIDELLLYW NLSDTDRVLD
101: ELEEVLLVAD FGPKITIKIV ESLREDIYAG KIKSGSEIKS VLKKSILDLL TSKAPKTELS LGFRKPAVIM IVGVNGGGKT TSLGKLANRL KREGAKILLA
201: AGDTFRAAAS DQLEIWAERT GCEIVVAEKE KAKASSVISQ AVKRGKEEGF DIVLCDTSGR LHTNYSLMEE LVACKKVVSK IVNGAPNEIL LVLDGTTGLN
301: MLPQAREFNE VVGITGLILT KLDGSARGGC VVSVVDELGI PVKFVGVGEG VDDLQPFNAE EFVDAIFP

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.