Factsheet for Solyc09g009940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087400.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Solyc02g087400.1.1	AT2G47450.1	11306572
AT5G03940.1	Solyc02g087400.1.1	AT2G47450.1	14517205
AT5G03940.1	Solyc02g087400.1.1	AT2G47450.1	15292240
AT5G03940.1	Solyc02g087400.1.1	AT2G47450.1	15632183
AT5G03940.1	Solyc02g087400.1.1	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022884	Potato	plastid	96.83	98.21
VIT_08s0007g03160.t01	Wine grape	plastid	83.77	83.77
KRH67940	Soybean	plastid	80.95	81.24
GSMUA_Achr10P...	Banana	plastid	81.83	80.7
AT5G03940.1	Thale cress	plastid	79.19	79.61
CDY41424	Canola	plastid	78.13	78.41
Bra009499.1-P	Field mustard	plastid	78.13	78.27
CDX70273	Canola	plastid	77.95	78.09
Bra028809.1-P	Field mustard	plastid	74.6	75.0
CDY04905	Canola	plastid	74.43	74.82
CDY14166	Canola	plastid	74.25	74.65
Os11t0153600-01	Rice	cytosol	27.51	71.23
Zm00001d052556_P001	Maize	plastid	66.14	68.81
Os11t0153700-01	Rice	plastid	67.02	68.22
EES16662	Sorghum	plastid	67.2	68.16
KXG27759	Sorghum	plastid	66.14	68.06
TraesCS4D01G115500.1	Wheat	plastid	66.31	67.87
Zm00001d023431_P002	Maize	plastid	66.84	67.2
TraesCS4A01G197700.1	Wheat	plastid	65.61	67.15
HORVU4Hr1G021950.4	Barley	plastid	65.61	67.03
TraesCS4B01G117800.1	Wheat	plastid	65.43	66.97
TraesCS4D01G115600.1	Wheat	plastid	65.26	66.79
TraesCS4A01G197600.1	Wheat	plastid	65.08	66.73
HORVU4Hr1G021960.1	Barley	plastid	64.2	64.88
CDY14165	Canola	plastid	24.34	61.33
TraesCS4B01G117900.1	Wheat	plastid	64.02	61.01
Solyc12g042740.1.1	Tomato	cytosol	23.28	26.45
Solyc01g091580.2.1	Tomato	plastid	16.75	25.82
Solyc03g116810.2.1	Tomato	nucleus	23.1	22.2
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	16.05	14.7
Os11t0153800-01	Rice	nucleus	0.53	2.78

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019904	GO:GO:0032991
GO:GO:0043234	GO:GO:0048500	GO:GO:0070208	GO:GO:0080085	InterPro:IPR036891	UniProt:K4CR23
HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF24	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	EnsemblPlantsGene:Solyc09g009940.2	EnsemblPlants:Solyc09g009940.2.1	TIGRFAMs:TIGR00959	UniParc:UPI000276C8EC	:

Description

Signal recognition particle 54 kDa protein, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G03940) UniProtKB/Swiss-Prot;Acc:P37107]

Coordinates

chr9:-:3401811..3408955

Molecular Weight (calculated)

62204.8 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.278

Length

567 amino acids

Sequence
(BLAST)

001: MEATASFTST MASHHFFPLS KATLSSSKLN PTCNSSSSWI GSTHSLSFSS RNSFTRDTWR VINSKNVVRR EMSGVIRAEM FGQLTSGLEN AWNKLKGEEV
101: LTKENIVEPM RDIRRALLEA DVSLPVVRRF VQSVSEEAVG TGLIRGVKPD QQLVKTVRDE LVKLMGGEVS ELVFAKSKPT VILLAGLQGV GKTTVSAKLA
201: LYLKKQGKSC MLIAGDVYRP AAIDQLVILG KQVDVPVYAA GTDVKPAEIA RQGLQEAKKK NVDVVIMDTA GRLQIDKTMM DELKDVKRVL NPTEVLLVVD
301: AMTGQEAAAL VTTFNLEIGI TGAILTKLDG DSRGGAALSV KEVSGKPIKL VGRGERMEDL EPFYPDRMAG RILGMGDVLS FVEKAQEVMR QEDAEDLQKK
401: IMSAKFDFND FLKQTRAVAR MGTMSRVIGM MPGMGKVTPA QIREAEKSLK IMESMIDVMT PEEREQPELL AESPARRKRI AQESGKTEQQ VSQLVAQLFQ
501: MRVRMKNLMG VMEGGSIPAL SNLEEALKSE QQAPPGTARR KRRSEPRKQF ADSGSARPSP RGFGAKN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.