CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	CDX77337	AT2G47450.1	11306572
AT5G03940.1	CDY70592	AT2G47450.1	11306572
AT5G03940.1	CDX77337	AT2G47450.1	14517205
AT5G03940.1	CDY70592	AT2G47450.1	14517205
AT5G03940.1	CDX77337	AT2G47450.1	15292240
AT5G03940.1	CDY70592	AT2G47450.1	15292240
AT5G03940.1	CDX77337	AT2G47450.1	15632183
AT5G03940.1	CDY70592	AT2G47450.1	15632183
AT5G03940.1	CDX77337	AT2G47450.1	16678173
AT5G03940.1	CDY70592	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028809.1-P	Field mustard	plastid	99.11	99.11
CDY14166	Canola	plastid	96.81	96.81
CDX70273	Canola	plastid	89.01	88.69
CDY14165	Canola	plastid	35.28	88.44
CDY41424	Canola	plastid	88.3	88.14
AT5G03940.1	Thale cress	plastid	87.59	87.59
VIT_08s0007g03160.t01	Wine grape	plastid	77.66	77.25
PGSC0003DMT400022884	Potato	plastid	75.0	75.67
KRH67940	Soybean	plastid	75.0	74.87
Solyc09g009940.2.1	Tomato	plastid	74.82	74.43
GSMUA_Achr10P...	Banana	plastid	73.58	72.17
EES16662	Sorghum	plastid	66.31	66.91
Zm00001d023431_P002	Maize	plastid	66.49	66.49
Os11t0153600-01	Rice	cytosol	25.71	66.21
Os11t0153700-01	Rice	plastid	64.54	65.35
KXG27759	Sorghum	plastid	63.65	65.15
TraesCS4D01G115500.1	Wheat	plastid	63.83	64.98
Zm00001d052556_P001	Maize	plastid	62.77	64.95
TraesCS4A01G197700.1	Wheat	plastid	63.65	64.8
TraesCS4B01G117800.1	Wheat	plastid	63.48	64.62
TraesCS4D01G115600.1	Wheat	plastid	63.12	64.26
TraesCS4A01G197600.1	Wheat	plastid	62.94	64.2
HORVU4Hr1G021950.4	Barley	plastid	63.12	64.14
HORVU4Hr1G021960.1	Barley	plastid	63.12	63.46
TraesCS4B01G117900.1	Wheat	plastid	62.23	58.99
CDY16472	Canola	cytosol	19.33	27.81
CDX77276	Canola	cytosol	23.4	26.61
CDY18901	Canola	plastid	17.02	26.59
CDY40616	Canola	cytosol	23.23	26.46
CDX93702	Canola	cytosol	23.23	26.46
CDY27360	Canola	plastid	17.2	26.43
CDY37064	Canola	plastid	17.2	26.36
CDX74765	Canola	plastid	17.02	26.09
CDY36546	Canola	cytosol	21.63	25.47
CDY39632	Canola	cytosol	21.63	25.42
CDY10656	Canola	cytosol	8.33	23.98
CDY46694	Canola	cytosol	11.35	20.65
CDY17067	Canola	cytosol, nucleus	11.52	20.12
CDY39221	Canola	cytosol, endoplasmic reticulum	16.67	15.28
CDX72255	Canola	cytosol, endoplasmic reticulum	16.49	15.1
CDY28196	Canola	endoplasmic reticulum	16.49	14.95
CDX68673	Canola	extracellular	16.31	14.65
Os11t0153800-01	Rice	nucleus	0.35	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	GO:A0A078ESI1	InterPro:AAA+_ATPase
EnsemblPlants:CDY04905	ProteinID:CDY04905	ProteinID:CDY04905.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00119626001	InterPro:IPR036891	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF24	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom
InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
TIGRFAMs:TIGR00959	UniParc:UPI0004EEC6D9	SEG:seg	:	:	:

Description

BnaAnng00870D

Coordinates

chrLK031958:-:626703..629793

Molecular Weight (calculated)

61454.9 Da

IEP (calculated)

10.239

GRAVY (calculated)

-0.307

Length

564 amino acids

Sequence
(BLAST)

001: MESLQFSSRF SVNRVQCTQN RTTSRTSRAV CRSAFTGTTN SASLSSKSTS TREIWSWVKS KTIGHGRYRR SQVRAEMFGQ LSSGLEAAWT KLKGEDVMTK
101: ENIAEPMKDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVAAKLAYNL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEKI GVPVYTAGTE AKPADIAKQG LKEAKMNNVD VVIMDTAGRL QVDKEMMDEL KDVKRFLNPT ETLLVVDAMT
301: GQEAASLVSA FSVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPNRMAGRIL GMGDVLSFVE KAQEVMRQED AEDLQKKIMS
401: EKFDFNDLLK QTRAVAKIGS VSRVLGMIPG MGKVSPAQIR EAEKSLVIME AMIEAMTPEE KEKPELLAES PERRKRIAKD SGKTEQQVSQ LVAQIFQMRV
501: KMKNLMGAME GGANPAFTDL ADAMKAEQKG LPGTARRKKK AESRKKFVES ASSKPGPRGF GSGN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.