Factsheet for Os11t0153700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0131900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Os03t0131900-01	AT2G47450.1	11306572
AT5G03940.1	Os03t0131900-01	AT2G47450.1	14517205
AT5G03940.1	Os03t0131900-01	AT2G47450.1	15292240
AT5G03940.1	Os03t0131900-01	AT2G47450.1	15632183
AT5G03940.1	Os03t0131900-01	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27759	Sorghum	plastid	75.76	76.59
TraesCS4D01G115500.1	Wheat	plastid	75.58	75.99
TraesCS4A01G197700.1	Wheat	plastid	75.58	75.99
TraesCS4B01G117800.1	Wheat	plastid	75.4	75.81
Zm00001d052556_P001	Maize	plastid	74.15	75.78
Os11t0153600-01	Rice	cytosol	29.26	74.43
HORVU4Hr1G021960.1	Barley	plastid	72.71	72.19
VIT_08s0007g03160.t01	Wine grape	plastid	68.58	67.37
GSMUA_Achr10P...	Banana	plastid	69.48	67.3
Solyc09g009940.2.1	Tomato	plastid	68.22	67.02
PGSC0003DMT400022884	Potato	plastid	67.15	66.91
KRH67940	Soybean	plastid	67.86	66.9
AT5G03940.1	Thale cress	plastid	67.5	66.67
Bra009499.1-P	Field mustard	plastid	66.07	65.02
CDY41424	Canola	plastid	65.89	64.96
CDX70273	Canola	plastid	65.89	64.84
CDY04905	Canola	plastid	65.35	64.54
Bra028809.1-P	Field mustard	plastid	64.99	64.18
CDY14166	Canola	plastid	64.81	64.01
CDY14165	Canola	plastid	20.29	50.22
Os01t0772800-01	Rice	plasma membrane	23.88	26.81
Os05t0509500-01	Rice	plasma membrane	22.98	26.5
Os01t0958100-01	Rice	plastid	15.98	24.52
Os11t0153800-01	Rice	nucleus	0.36	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	EntrezGene:4349809	InterPro:AAA+_ATPase
ProteinID:AAX92735.1	ProteinID:ABG22368.1	EMBL:AK058576	ProteinID:BAF27626.1	ProteinID:BAT12737.1	ProteinID:EEE51666.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500
InterPro:IPR036891	HAMAP:MF_00306	EnsemblPlantsGene:Os11g0153700	EnsemblPlants:Os11t0153700-01	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF19	UniProt:Q53QG1
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh
SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959
UniParc:UPI000050893A	RefSeq:XP_015617529.1	SEG:seg	:	:	:

Description

Similar to Signal recognition particle 54 kDa protein, chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC). (Os11t0153700-01)

Coordinates

chr11:+:2517481..2521841

Molecular Weight (calculated)

61223.9 Da

IEP (calculated)

10.443

GRAVY (calculated)

-0.290

Length

557 amino acids

Sequence
(BLAST)

001: MEATSSTTLA LSSPPTAAAR RSPAKAIVAS HHLRHSSVPA LHLRAVPGPS FRALPSPGFP GWRRKRGSGL VVRAEMFGQL TTGLESAWNK LRGTDQLTKD
101: NIAEPMRDIR RALLEADVSL PVVRSFIESV TEKAVGTDVI RGVKPEQQLV KVVNDELVQL MGGEVSDLVF AKTAPTVILL AGLQGVGKTT VCAKLAYYLK
201: KMGKSCMLIA ADVYRPAAID QLTILGKQVG VPVYSEGTEA KPSQIAKNGI KEAKSKKTDV IIVDTAGRLQ VDKAMMSELK EVKRAVNPTE VLLVVDAMTG
301: QEAASLVSTF NVEIGITGAI LTKLDGDSRG GAALSIKEVS GKPIKFVGRG ERMEDLEPFY PDRMAQRILG MGDVLSFVEK AQEVMRQEDA EELQKKILSA
401: KFNFNDFLKQ TQAIAQMGSF SRIIGMIPGM NKVTPAQIRE AEKNLKFMES MINVMTPEER ERPELLAESR ERRIRVAKES GKNERQVSQL VAQLFRMRAQ
501: MQKMMGAMQG QDTPDMEGLM DSIKAEEQAA AGTGKRRRKY GNLRRRDLDA MRGFRRR

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.