Factsheet for GSMUA_Achr10P15700_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03160.t01	Wine grape	plastid	81.04	82.19
PGSC0003DMT400022884	Potato	plastid	79.65	81.93
Solyc09g009940.2.1	Tomato	plastid	80.7	81.83
KRH67940	Soybean	plastid	79.3	80.71
AT5G03940.1	Thale cress	plastid	76.0	77.48
CDY41424	Canola	plastid	73.91	75.22
Bra009499.1-P	Field mustard	plastid	73.91	75.09
CDX70273	Canola	plastid	73.91	75.09
Bra028809.1-P	Field mustard	plastid	72.17	73.58
CDY04905	Canola	plastid	72.17	73.58
CDY14166	Canola	plastid	71.65	73.05
Os11t0153600-01	Rice	cytosol	27.65	72.6
Zm00001d052556_P001	Maize	plastid	68.0	71.74
KXG27759	Sorghum	plastid	68.7	71.69
TraesCS4D01G115500.1	Wheat	plastid	68.7	71.3
TraesCS4A01G197700.1	Wheat	plastid	68.0	70.58
EES16662	Sorghum	plastid	68.52	70.48
TraesCS4B01G117800.1	Wheat	plastid	67.83	70.4
Zm00001d023431_P002	Maize	plastid	68.35	69.68
TraesCS4D01G115600.1	Wheat	plastid	67.13	69.68
TraesCS4A01G197600.1	Wheat	plastid	66.96	69.62
HORVU4Hr1G021950.4	Barley	plastid	67.13	69.55
Os11t0153700-01	Rice	plastid	67.3	69.48
HORVU4Hr1G021960.1	Barley	plastid	66.78	68.45
TraesCS4B01G117900.1	Wheat	plastid	65.74	63.53
CDY14165	Canola	plastid	23.65	60.44
GSMUA_Achr8P03120_001	Banana	cytosol	24.0	27.77
GSMUA_Achr5P20650_001	Banana	cytosol	14.96	25.52
GSMUA_Achr11P...	Banana	plastid	15.65	23.56
GSMUA_Achr9P25680_001	Banana	cytosol	14.96	19.72
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	15.3	18.49
GSMUA_Achr11P...	Banana	endoplasmic reticulum	17.39	17.76
Os11t0153800-01	Rice	nucleus	0.52	2.78

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019904	GO:GO:0032991
GO:GO:0043234	GO:GO:0048500	GO:GO:0070208	GO:GO:0080085	EnsemblPlantsGene:GSMUA_Achr10G15700_001	EnsemblPlants:GSMUA_Achr10P15700_001
EnsemblPlants:GSMUA_Achr10T15700_001	InterPro:IPR036891	UniProt:M0RIJ6	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF24	SMART:SM00382
SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	UniParc:UPI000296E08D
SEG:seg	:	:	:	:	:

Description

Signal recognition particle 54 kDa protein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G15700_001]

Coordinates

chr10:-:23527538..23532733

Molecular Weight (calculated)

62874.6 Da

IEP (calculated)

10.196

GRAVY (calculated)

-0.228

Length

575 amino acids

Sequence
(BLAST)

001: MEAVSFSASP YRHLSLCAPS LHCSGAFCGA RVAGRPNLSS NSSTSWTGST LYLGSSRRTL FTRELWGWIN SKSEHVSRGR CFTVRAEMFG QLTTGLETAW
101: NKLRGVDVLT KENIAEPMRD IRRALLEADV SLPVVRRFVQ SVSDQAVGAG LIRGVRPDQQ LVKIVHDELV KLMGGEVSEL VFAKSGPTVM LLAGLQGVGK
201: TTVSAKLAFY LKKLGKSCML VAADVYRPAA VDQLKILGEK VGVPVYAEGT NVKPSEIAKH GLEEARKKSI DVVIVDTAGR LQIDKTMMDE LKEVKQALNP
301: TEVLLVVDAM TGQEAAALVT TFNIEIGITG AILTKLDGDS RGGAALSVRE VSGRPIKLVG RGERMEDLEP FYPDRMAGRI LGMGDVLSFV EKAQEVMRQE
401: DAEELQKKIM SAKFDFNDFL KQTRAVAQMG SVSRVIGMIP GMGKVTPSQI REAEKNLKIM ESMINVMTPE EREKPELLAE SPARRKRIAT ESGKTEQQVS
501: QLVAQLFQMR VRMKNLLGVM QGGSIPALSN LEESLKAEQK APPGTARRRR RSEPRKQFAD SASARPSPRG FGSKN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.