Factsheet for GSMUA_Achr5P20650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	96.44	68.28
KRH72313	Soybean	cytosol	53.41	58.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum	94.66	56.66
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	89.32	48.86
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	89.61	48.4
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	88.43	48.14
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	89.91	48.02
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	87.83	47.82
TraesCS5A01G534900.1	Wheat	golgi	90.8	47.66
KRH03040	Soybean	endoplasmic reticulum	88.13	47.44
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	90.8	47.44
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	86.35	47.39
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	90.8	47.37
KRH54944	Soybean	endoplasmic reticulum	87.54	47.35
CDY39221	Canola	cytosol, endoplasmic reticulum	86.05	47.15
CDX72255	Canola	cytosol, endoplasmic reticulum	86.05	47.08
Bra011203.1-P	Field mustard	endoplasmic reticulum	85.16	46.14
CDY28196	Canola	endoplasmic reticulum	85.16	46.14
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	82.79	46.04
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	82.79	45.89
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	83.09	45.75
CDX68673	Canola	extracellular	85.16	45.7
AT4G30600.1	Thale cress	endoplasmic reticulum	85.76	45.58
EES17686	Sorghum	endoplasmic reticulum, extracellular	79.53	45.58
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	83.98	44.71
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	60.83	38.9
GSMUA_Achr11P...	Banana	plastid	26.71	23.56
GSMUA_Achr8P03120_001	Banana	cytosol	25.52	17.3
GSMUA_Achr9P25680_001	Banana	cytosol	20.18	15.6
GSMUA_Achr10P...	Banana	plastid	25.52	14.96

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	EnsemblPlantsGene:GSMUA_Achr5G20650_001	EnsemblPlants:GSMUA_Achr5P20650_001	EnsemblPlants:GSMUA_Achr5T20650_001	UniProt:M0T094
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF4
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364
SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI000296EAF9	SEG:seg	:	:

Description

Signal recognition particle receptor subunit alpha homolog [Source:GMGC_GENE;Acc:GSMUA_Achr5G20650_001]

Coordinates

chr5:+:22524049..22528282

Molecular Weight (calculated)

37061.9 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.136

Length

337 amino acids

Sequence
(BLAST)

001: MMDKEEVVSS DSEHEEDEEL ENEKPGIKKK GWFSSMLQSI SGNAVLEKSD LQPALKALKD RLMTKNVAEE IAEKLCESVA ASLEGMKLGS FTRVSSTVQT
101: AMEEALLRIL TPKRSIDILR DVHAAKEQGR PYVVVFVGVN GVGKSTNLAK VAYWLLQHNI NVMLAACDTF RSGAVEQLRT HARRLQIPIF EKGYEKDPAI
201: VAKEAIQEAK RNNSDVVLVD TAGRMQDNEP LMRALSKLIN LNNPDLVLFV GEALVGNDAV DQLTKFNQKL ADLSTVPNAR LIDGILLTKF DTIDDKVGAA
301: LSMVYVSGAP VMFVGCGQSY TDLKKLNVKS IVKTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.