Factsheet for TraesCS4D01G360300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, mitochondrion, plastid
Any Predictor:	cytosol, golgi, mitochondrion, plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G534900.1	Wheat	golgi	96.75	97.35
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	95.67	95.81
GSMUA_Achr5P20650_001	Banana	cytosol	47.37	90.8
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	78.48	81.25
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	78.02	79.87
GSMUA_Achr11P...	Banana	endoplasmic reticulum	69.5	79.75
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	54.8	74.37
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	70.9	74.35
KRH54944	Soybean	endoplasmic reticulum	69.97	72.55
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	68.58	71.57
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	68.42	71.41
KRH03040	Soybean	endoplasmic reticulum	69.04	71.25
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	66.72	71.12
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	67.18	70.68
CDX72255	Canola	cytosol, endoplasmic reticulum	67.34	70.62
CDY39221	Canola	cytosol, endoplasmic reticulum	66.87	70.24
AT4G30600.1	Thale cress	endoplasmic reticulum	68.73	70.03
CDY28196	Canola	endoplasmic reticulum	67.34	69.94
Bra011203.1-P	Field mustard	endoplasmic reticulum	67.34	69.94
CDX68673	Canola	extracellular	67.8	69.75
KRH72313	Soybean	cytosol	32.97	69.16
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	53.87	66.03
TraesCS4D01G115600.1	Wheat	plastid	15.48	18.05
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	13.31	17.77
TraesCS1D01G329300.1	Wheat	cytosol	13.62	17.71
TraesCS4D01G115500.1	Wheat	plastid	15.17	17.69

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
EnsemblPlantsGene:TraesCS4D01G360300	EnsemblPlants:TraesCS4D01G360300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:507279950..507284479

Molecular Weight (calculated)

69910.4 Da

IEP (calculated)

8.611

GRAVY (calculated)

-0.445

Length

646 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSSCR ALAGGAALLK GSPIDALIRS CLLEERSGDA GFTKDAYALK WTFNNDLGLV FVAVYQRMLH LLYVDDLLAA VRKEFSQIYN
101: PKRVSYDDLF TETFRQLHLE AEARAEAMKK SRQQPANPSS AGAGRGPAGK KLGPNARAGG GGGAGKKNSG SGKDDSDGSD SGKEQNGGFT ANGGSVAKGG
201: HENGAVKDTS RTARAVVVDN DGKENGDPND GAFDVNTLRR KTGGKKGGGG GGKKNDVKKP AKTEPKKVVK QMRVWDDKPP KNEKLDFTDP ADERGEEVIE
301: KVLTNQGDSM MDKDEDLSSD SEDEEEEEEE NAGAGQKKKG WFSSMFKSIA GNNVLEKSDL QPALKALKDR LMTKNVAEEI AEKLCESVAA SLEGKKLGSF
401: TRISSTVQTA MEEALLRILT PRRSIDILRD VQAAKERGKP YVVVFVGVNG VGKSTNLAKV AYWLLQHNLS VMMAACDTFR SGAVEQLRTH ARRLQIPIFE
501: KGYEKDPAVV AKEAIQEATR NKSDVVLVDT AGRMQDNEPL MRALSKLINL NKPDLVLFVG EALVGNDAVD QLNKFNQKLA DLSTVPTARL IDGILLTKFD
601: TIDDKVGAAL SMVYISGSPV MFVGCGQSYT DLKKLNVKSI VKTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.