Factsheet for TraesCS5A01G534900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 2
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion, plastid
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	97.35	96.75
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	95.79	95.35
GSMUA_Achr5P20650_001	Banana	cytosol	47.66	90.8
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	78.97	81.25
GSMUA_Achr11P...	Banana	endoplasmic reticulum	70.25	80.11
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	78.5	79.87
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	55.61	75.0
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	71.03	74.03
KRH54944	Soybean	endoplasmic reticulum	69.94	72.07
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	68.85	71.41
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	68.69	71.24
KRH03040	Soybean	endoplasmic reticulum	69.31	71.09
CDX72255	Canola	cytosol, endoplasmic reticulum	67.76	70.62
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	67.45	70.52
CDY39221	Canola	cytosol, endoplasmic reticulum	67.29	70.24
AT4G30600.1	Thale cress	endoplasmic reticulum	69.16	70.03
Bra011203.1-P	Field mustard	endoplasmic reticulum	67.76	69.94
CDY28196	Canola	endoplasmic reticulum	67.76	69.94
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	66.67	69.93
CDX68673	Canola	extracellular	68.22	69.75
KRH72313	Soybean	cytosol	33.33	69.48
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	54.05	65.84
TraesCS3A01G498300.1	Wheat	plastid	15.42	27.58
TraesCS1A01G327300.1	Wheat	cytosol	14.17	18.46
TraesCS4A01G197600.1	Wheat	plastid	15.73	18.26
TraesCS4A01G197700.1	Wheat	plastid	15.42	17.87
TraesCS3A01G322800.1	Wheat	mitochondrion	13.4	17.77
TraesCS1A01G327200.1	Wheat	cytosol	13.71	17.71
TraesCS1A01G075500.1	Wheat	golgi	9.81	15.71

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
EnsemblPlantsGene:TraesCS5A01G534900	EnsemblPlants:TraesCS5A01G534900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:691824103..691828409

Molecular Weight (calculated)

69500.9 Da

IEP (calculated)

8.404

GRAVY (calculated)

-0.436

Length

642 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSSCR ALGGAALLKG SPIDALIRSC LLEERSGDAG FTKDAYALKW TFNNDLGLVF VAVYQRMLHL LYVDGLLAAV RKEFSQIYNP
101: KRVSYDDLFT ETFRQLHLEA EARAEAMNKS KQQPTNPSSG SGAGRGPAGK KLGPNARAGG GAAGKKNSGS GKDDSDGDSG KEHNGGFTAN GTVAKGGQEN
201: GAVKDSSRAA RAVVVDNDGK ENGDPNDGAF DVNTLRKKTG GKKGGGGGKK NDVKKAAKTE PKKVVKQMRV WDDKPPKNEK LDFTDPADER GEEVIEKVLT
301: NQGDSMMDKD EDLSSDSEDE EDEEEENAGA GQKKKGWFSS MFKSIAGNNV LEKSDLQPAL KALKDRLMTK NVAEEIAEKL CESVAASLEG KKLGSFTRIS
401: STVQTAMEEA LLRILTPRRS IDILRDVQAA KERGKPYVVV FVGVNGVGKS TNLAKVAYWL LQHNLSVMMA ACDTFRSGAV EQLRTHARRL EIPIFEKGYE
501: KDPAVVAKEA IQEATRNKSD VVLVDTAGRM QDNEPLMRAL SKLINLNKPD LVLFVGEALV GNDAVDQLNK FNQKLADLST VPTARLIDGI LLTKFDTIDD
601: KVGAALSMVY ISGSPVMFVG CGQSYTDLKK LNVKSIVKTL LK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.