Factsheet for VIT_11s0037g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
mitochondrion 3
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20650_001	Banana	cytosol	48.86	89.32
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	83.6	83.2
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	83.28	82.88
KRH54944	Soybean	endoplasmic reticulum	83.77	82.83
GSMUA_Achr11P...	Banana	endoplasmic reticulum	74.51	81.53
AT4G30600.1	Thale cress	endoplasmic reticulum	81.49	79.18
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	77.11	77.36
CDX72255	Canola	cytosol, endoplasmic reticulum	77.27	77.27
Bra011203.1-P	Field mustard	endoplasmic reticulum	77.92	77.17
CDY28196	Canola	endoplasmic reticulum	77.92	77.17
KRH03040	Soybean	endoplasmic reticulum	78.41	77.16
CDX68673	Canola	extracellular	78.25	76.75
CDY39221	Canola	cytosol, endoplasmic reticulum	76.62	76.75
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	58.12	75.21
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	63.31	74.0
KRH72313	Soybean	cytosol	36.69	73.38
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	73.86	72.92
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	73.86	72.11
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	74.68	71.32
TraesCS5A01G534900.1	Wheat	golgi	74.03	71.03
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	74.35	70.9
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	65.1	65.52
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	64.29	65.35
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	63.96	64.8
EES17686	Sorghum	endoplasmic reticulum, extracellular	60.39	63.27
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	64.94	63.19
VIT_15s0048g02080.t01	Wine grape	plastid	16.56	27.79
VIT_09s0002g07290.t01	Wine grape	cytosol	14.12	17.58
VIT_08s0007g03160.t01	Wine grape	plastid	15.75	17.11

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:100256941	wikigene:100256941	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:AM431114	ProteinID:CAN66971	ProteinID:CAN66971.1	ProteinID:CCB59764	ProteinID:CCB59764.1
UniProt:F6HYK0	EMBL:FN596499	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	EntrezGene:LOC100256941	wikigene:LOC100256941
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
TIGR:TC63479	UniParc:UPI00015C9B1C	ArrayExpress:VIT_11s0037g00300	EnsemblPlantsGene:VIT_11s0037g00300	EnsemblPlants:VIT_11s0037g00300.t01	unigene:Vvi.6715
RefSeq:XP_002278056	RefSeq:XP_002278056.1	RefSeq:XP_019078685.1	RefSeq:XP_019078686.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:8113281..8117867

Molecular Weight (calculated)

67610.1 Da

IEP (calculated)

7.873

GRAVY (calculated)

-0.381

Length

616 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE LGNALKGSPI DTLIRSCLLE ERSGAASYNY DAPGAAYTLK WTFHNELGLV FVAVYQRILH LLYVDDLLAM LKREFSVIYD
101: PKRTAYDDFD ETFRQLRMEA EARAEELKKS KPVAKPVNNS KKQGQVQKVG FEGGNKKKGG SGPGSDGGDG NGRKMENGHA NGNTDETKVA LVANGKENAS
201: SNIGAFDVNK LQKLRAKGGK KTDTVVNKGS KVDPNKKITK KNRVWDVSPT ESKLDFTDPA DQNGDENAVI VAADEGESMM DKEEIVSSES ETEEDEEMEK
301: DSKMETKKKG WFSAMFQSIA GKANLEKADL EPALKALKDR LMTKNVAEEI AEKLCESVAA SLEGKKLASF TRVSSTVQAA MEEALVRILT PRRSIDILRD
401: VHAAKEQRKP YVVVFVGVNG VGKSTNLAKV AYWLLQHNVS VMMAACDTFR SGAVEQLRTH ARRLQIPIFE KGYEKDPAIV AKEAIQEATR NGSDVVLVDT
501: AGRMQDNEPL MRALSKLVNL NNPDLVLFVG EALVGNDAVD QLSKFNQKLA DLSTSPKPQL IDGILLTKFD TIDDKVGAAL SMVYISGAPV MFVGCGQSYT
601: DLKKLNVKSI VKTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.