CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
extracellular 2
cytosol 1
mitochondrion 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20650_001	Banana	cytosol	45.58	79.53
GSMUA_Achr11P...	Banana	endoplasmic reticulum	63.44	66.25
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	67.86	65.2
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	67.01	64.8
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	66.67	64.69
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	68.2	64.26
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	66.84	62.09
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	50.0	61.76
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	63.27	60.39
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	63.1	59.94
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	62.93	59.77
KRH54944	Soybean	endoplasmic reticulum	62.76	59.23
KRH72313	Soybean	cytosol	30.78	58.77
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	61.05	58.47
CDY39221	Canola	cytosol, endoplasmic reticulum	61.05	58.37
CDX72255	Canola	cytosol, endoplasmic reticulum	61.05	58.28
AT4G30600.1	Thale cress	endoplasmic reticulum	62.76	58.2
CDX68673	Canola	extracellular	61.9	57.96
CDY28196	Canola	endoplasmic reticulum	61.22	57.88
Bra011203.1-P	Field mustard	endoplasmic reticulum	61.22	57.88
KRH03040	Soybean	endoplasmic reticulum	61.56	57.83
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	47.96	53.51
EES04254	Sorghum	plastid	15.65	25.14
KXG37974	Sorghum	cytosol	13.95	18.39
KXG37972	Sorghum	cytosol	13.78	18.16
EES16662	Sorghum	plastid	16.67	17.53
EES01544	Sorghum	cytosol	14.12	16.73
KXG27759	Sorghum	plastid	15.65	16.7
KXG34125	Sorghum	cytosol	13.95	16.5
EES19782	Sorghum	cytosol	13.27	16.18

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	EntrezGene:8068211	InterPro:AAA+_ATPase
UniProt:C5YZN3	EnsemblPlants:EES17686	ProteinID:EES17686	ProteinID:EES17686.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	EnsemblPlantsGene:SORBI_3009G037700
InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N
InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI0001A886DE	RefSeq:XP_002439256.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:3547843..3549609

Molecular Weight (calculated)

64222.2 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.406

Length

588 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWALSG GGGGKGSPVD ALIRNCLLEE RSAGGDGPGF FQDGKHALKW AFHNGLGLVF VAVYRRVLRL LYVDDLLAAV RAEFARVYHP
101: KRTTYDGFGD VFRQLHLEAQ ARAEEMSRAN NKQKPVDAAS PHRRPRPQPP VVHNSPGDSE SDGNGGNGDG SKKDSSDGVS GEKEEEKEDG QAFDLSFFSN
201: LRTRFTHRNK DKTNTNKPIK KDVNKRKNPR DGNNNEHSDR KLDFSDPTDA SKQTDNARVN QGQSKVDLAE TVEDGTRTKG WFSSVFQSIA GGNSVIERSD
301: LQPALKALKD RLMTKNVAEE IAEKLCESVA ASLEGKKQGS FTSTASTVQA AMEAALVRIL TPSRSIDVLR DVHAAKDSGR PYVIVFVGVN GVGKSTNLAK
401: VAYWLLQHDL TVTLAACDTF RSGAVEQLRT HARRLQIPVF EKGYQRDPAV VAKQAIEEAA RSRSDVVLVD TAGRMQDNEP LMRALSKLIA VNSPDLVLFV
501: GEALVGNDAV DQLTQFHQKL ADLSPVHVEK RLIDGILLSK FDTVDDKVGA ALSMVYVSGA PVMFVGCGQS YTDLKKLNVK SIVNTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.