Factsheet for TraesCS6D01G089600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 6
vacuole 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	95.54	95.23
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	94.06	93.14
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	91.91	87.99
GSMUA_Achr5P20650_001	Banana	cytosol	46.04	82.79
GSMUA_Achr11P...	Banana	endoplasmic reticulum	64.19	69.09
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	71.12	66.72
EES17686	Sorghum	endoplasmic reticulum, extracellular	64.69	66.67
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	51.82	65.97
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	65.35	64.29
KRH72313	Soybean	cytosol	31.52	62.01
KRH54944	Soybean	endoplasmic reticulum	63.7	61.96
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	63.04	61.71
KRH03040	Soybean	endoplasmic reticulum	63.53	61.5
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	62.21	61.4
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	62.71	61.39
CDX72255	Canola	cytosol, endoplasmic reticulum	62.21	61.2
CDY39221	Canola	cytosol, endoplasmic reticulum	61.88	60.98
AT4G30600.1	Thale cress	endoplasmic reticulum	63.53	60.73
CDY28196	Canola	endoplasmic reticulum	62.21	60.61
Bra011203.1-P	Field mustard	endoplasmic reticulum	62.21	60.61
CDX68673	Canola	extracellular	62.71	60.51
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	48.84	56.17
TraesCS4D01G115500.1	Wheat	plastid	16.67	18.23
TraesCS4D01G115600.1	Wheat	plastid	16.34	17.87
TraesCS1D01G329300.1	Wheat	cytosol	14.03	17.1
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	13.53	16.94

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx
EnsemblPlantsGene:TraesCS6D01G089600	EnsemblPlants:TraesCS6D01G089600.1	TIGR:cd03115	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:55632897..55634861

Molecular Weight (calculated)

65284.8 Da

IEP (calculated)

8.908

GRAVY (calculated)

-0.350

Length

606 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSLAG AAAALKGSPI DALVRSFLLE GRSASAGFTH GPHALRWTYD NALGLVFVAV YRRVLHLLYV DDLLVAVSAE FARIYNPRRV
101: SYDEFGERFR QLHLEAEARA SRPSSVSAKP GPAASSPGAP QPHGGGGGGG EGEKTADESG KDDSDGEPSR QEKHSPAADG SVNGLEENSH AGHGGLVVKR
201: EEEGGPNNGA FNLENIKKIL FPHNDKGGDK PKRPVHKHKK PRPGRDKKPV PKDKKPSEQK LDYSNPADHG GGAGEQTAVN QGKSMMDKDE AVRSTAKDGW
301: FSSMFRSIAG SNAEVKESDL QPALKSLKDR LMTKNVAEEI AEKLCESVAA SLLGKKLGSF TRISSSVQTA MEEALVRILT PRRSIDVLRD IHAAKDRGAP
401: YVIVFVGVNG VGKSTNLAKV AYWLLQHDVS VTLAACDTFR SGAVEQLRTH ARRLQIPIFE KGYERDPAVV AKGAIQEATR NKSDVVLVDT AGRMQDNEPL
501: MRALSKLINL NNPDLVLFVG EALVGNDAVD QLTKFSQKLT DLSTAPTARS IDGILLTKFD TIDDKVGAAL SMVYVSGAPV MFVGCGQSYT DLKKLNVKSI
601: VNTLLE

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.