Factsheet for Solyc12g009990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
mitochondrion 4
extracellular 2
cytosol 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	99.19	99.19
GSMUA_Achr5P20650_001	Banana	cytosol	48.14	88.43
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	83.2	83.6
GSMUA_Achr11P...	Banana	endoplasmic reticulum	72.21	79.4
KRH54944	Soybean	endoplasmic reticulum	79.0	78.49
AT4G30600.1	Thale cress	endoplasmic reticulum	79.97	78.08
CDX72255	Canola	cytosol, endoplasmic reticulum	76.74	77.11
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	76.41	77.04
CDY39221	Canola	cytosol, endoplasmic reticulum	75.77	76.26
CDX68673	Canola	extracellular	76.58	75.48
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	58.0	75.42
Bra011203.1-P	Field mustard	endoplasmic reticulum	75.61	75.24
CDY28196	Canola	endoplasmic reticulum	75.61	75.24
KRH03040	Soybean	endoplasmic reticulum	75.77	74.92
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	62.84	73.81
KRH72313	Soybean	cytosol	35.54	71.43
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	71.73	71.15
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	71.73	70.36
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	72.05	69.15
TraesCS5A01G534900.1	Wheat	golgi	71.41	68.85
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	71.57	68.58
EES17686	Sorghum	endoplasmic reticulum, extracellular	59.94	63.1
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	61.71	63.04
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	62.2	62.91
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	61.39	62.5
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	61.55	60.19
Solyc01g091580.2.1	Tomato	plastid	15.99	26.9
Solyc12g042740.1.1	Tomato	cytosol	13.89	17.23
Solyc09g009940.2.1	Tomato	plastid	14.7	16.05
Solyc03g116810.2.1	Tomato	nucleus	13.89	14.58

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0016787	UniProt:K4DC87	InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881
PFAM:PF04086	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356
InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx	EnsemblPlantsGene:Solyc12g009990.1	EnsemblPlants:Solyc12g009990.1.1	UniParc:UPI0002769CC8	SEG:seg

Description

No Description!

Coordinates

chr12:+:3132677..3136254

Molecular Weight (calculated)

67987.4 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.434

Length

619 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE LGNALRGSPI DTLIRSCLLE ERSGAASFNY DVPGAAYTLK WTFHNDLGLV FVAVYQKILH LLYVDELLSM VKQEFSEIYD
101: PKRTVYNEFD NVFQQLRKEA EARAEEMKKS KQVSKPVNHN LGKKQGQVQK GIMDGGNQKK SGAESGNDSG DGDKVNSRAM ENGNGRSKVS KGNGVVQANG
201: KENRSSDSGA FDVNKLQKLR AKGGKKTDTI VKDSKAEPTK KAKKNRVWDD SPKESKLDFT DPMCENANGN TAVVEAVQGE SMMDKEEIVS SDSETEEDEE
301: PGKDSKVEAK KKGWFSSMFQ SIAGKANLDK ADLEPALKAL KDRLMTKNVA EEIAEKLCES VAASLEGKKL GSFTRISSTV QAAMEEALVR ILTPKRSIDI
401: LRDVHAAKEQ GKPYVVVFVG VNGVGKSTNL AKVAYWLQQH KVNVMMAACD TFRSGAVEQL RTHARRLQVP IFEKGYEKDP AIVAKEAIQE ANRNGSDVVL
501: VDTAGRMQDN EPLMRALSKL IYVNSPDLIL FVGEALVGND AVDQLSKFNQ KLGDLSPSPN PRLIDGILLT KFDTIDDKVG AALSMVYISG APVMFVGCGQ
601: SYTDLKKLNV KSIVKTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.