CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011203.1-P	Field mustard	endoplasmic reticulum	96.66	97.59
CDY28196	Canola	endoplasmic reticulum	96.66	97.59
AT4G30600.1	Thale cress	endoplasmic reticulum	89.49	88.64
CDX72255	Canola	cytosol, endoplasmic reticulum	86.62	88.31
CDY39221	Canola	cytosol, endoplasmic reticulum	85.99	87.8
GSMUA_Achr5P20650_001	Banana	cytosol	45.7	85.16
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	76.75	78.25
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	75.48	76.58
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	75.48	76.58
KRH54944	Soybean	endoplasmic reticulum	75.32	75.92
GSMUA_Achr11P...	Banana	endoplasmic reticulum	67.99	75.84
KRH03040	Soybean	endoplasmic reticulum	71.02	71.25
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	53.98	71.22
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.27	69.71
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.27	68.94
TraesCS5A01G534900.1	Wheat	golgi	69.75	68.22
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.9	68.06
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	69.75	67.8
KRH72313	Soybean	cytosol	32.8	66.88
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	60.51	62.71
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	60.83	62.42
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	60.03	62.01
EES17686	Sorghum	endoplasmic reticulum, extracellular	57.96	61.9
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	60.35	59.87
CDY18901	Canola	plastid	15.13	26.32
CDX74765	Canola	plastid	15.29	26.09
CDY27360	Canola	plastid	15.13	25.89
CDY37064	Canola	plastid	15.13	25.82
CDY10656	Canola	cytosol	5.89	18.88
CDY36546	Canola	cytosol	13.38	17.54
CDY39632	Canola	cytosol	13.38	17.5
CDX93702	Canola	cytosol	13.69	17.37
CDY40616	Canola	cytosol	13.69	17.37
CDX77276	Canola	cytosol	13.69	17.34
CDY16472	Canola	cytosol	10.67	17.09
CDY46694	Canola	cytosol	8.28	16.77
CDY17067	Canola	cytosol, nucleus	8.44	16.41
CDY04905	Canola	plastid	14.65	16.31
CDX70273	Canola	plastid	14.65	16.25
CDY41424	Canola	plastid	14.49	16.11
CDY14166	Canola	plastid	14.33	15.96
CDY14165	Canola	plastid	5.41	15.11

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	GO:A0A078C0K3	InterPro:AAA+_ATPase
EnsemblPlants:CDX68673	ProteinID:CDX68673	ProteinID:CDX68673.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00130349001	InterPro:Longin-like_dom_sf
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300	PANTHER:PTHR43134
PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom
SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI0004EDF1D3
SEG:seg	:	:	:	:	:

Description

BnaC01g07800D

Coordinates

chrLK031789:-:715757..718814

Molecular Weight (calculated)

69338.9 Da

IEP (calculated)

8.177

GRAVY (calculated)

-0.478

Length

628 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE LGKALKGSPI DTLIRSCLLE ERSGEVSFNY EAYTLKWTFH NDLGLVFVAV YQRILHLLYV DDLLSMVKES FSEIYDPKRM
101: SYDDFDETFR QLRMEAEARG EELRKVKQVG KVVSSVKKQG QVSKSGLDGG NKSGGGGSKK DVGDGDKDKD KVGSFMTNGN HKMEDDDSDK TNGKENTADN
201: VVLDPSKLMK LRSKGVRGRG GVRKTDSIGN KSSKVAAAEP PKKATKKNRV WDDAAPKQVK LDFTDSVGEN GNGNHDHVDI AAADQGESMM DKEEVFSSDD
301: ESEDDDDEPR SDEKKPEAKK KGWFSSVFQS ITGKANLERT DLKPALKALK ERLMTKNVAE EIAEKLCESV EASLEGKKLA SFTRISSTVQ GAMENALIRI
401: LTPRRSIDIM RDVHAAKEQR RPYVVVFVGV NGVGKSTNLA KVAYWLQQHK VSVMMAACDT FRSGAVEQLR THARRLQIPI FEKGYEKDPA VVAKEAIQEA
501: TRNGSDVVLV DTAGRMQDNE PLMRALSKLI NLNKPDLVLF VGEALVGNDA VDQLSKFNQK LSDLSNSGTT RLIDGILLTK FDTIDDKVGA ALSMVYISGA
601: PVMFVGCGQS YTDLKKLNVK AIVKTLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.