CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	CDX77337	AT2G47450.1	11306572
AT5G03940.1	CDY70592	AT2G47450.1	11306572
AT5G03940.1	CDX77337	AT2G47450.1	14517205
AT5G03940.1	CDY70592	AT2G47450.1	14517205
AT5G03940.1	CDX77337	AT2G47450.1	15292240
AT5G03940.1	CDY70592	AT2G47450.1	15292240
AT5G03940.1	CDX77337	AT2G47450.1	15632183
AT5G03940.1	CDY70592	AT2G47450.1	15632183
AT5G03940.1	CDX77337	AT2G47450.1	16678173
AT5G03940.1	CDY70592	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009499.1-P	Field mustard	plastid	98.59	98.59
CDY41424	Canola	plastid	96.64	96.81
AT5G03940.1	Thale cress	plastid	91.52	91.84
CDY04905	Canola	plastid	88.69	89.01
CDY14166	Canola	plastid	87.99	88.3
CDY14165	Canola	plastid	32.69	82.22
VIT_08s0007g03160.t01	Wine grape	plastid	81.8	81.66
PGSC0003DMT400022884	Potato	plastid	78.09	79.07
KRH67940	Soybean	plastid	78.09	78.23
Solyc09g009940.2.1	Tomato	plastid	78.09	77.95
GSMUA_Achr10P...	Banana	plastid	75.09	73.91
Os11t0153600-01	Rice	cytosol	27.03	69.86
KXG27759	Sorghum	plastid	66.78	68.6
TraesCS4D01G115500.1	Wheat	plastid	66.78	68.23
Zm00001d052556_P001	Maize	plastid	65.55	68.07
TraesCS4A01G197700.1	Wheat	plastid	66.25	67.69
TraesCS4B01G117800.1	Wheat	plastid	66.08	67.51
EES16662	Sorghum	plastid	66.43	67.26
Zm00001d023431_P002	Maize	plastid	66.61	66.84
HORVU4Hr1G021960.1	Barley	plastid	65.37	65.95
Os11t0153700-01	Rice	plastid	64.84	65.89
HORVU4Hr1G021950.4	Barley	plastid	63.6	64.86
TraesCS4D01G115600.1	Wheat	plastid	63.43	64.8
TraesCS4A01G197600.1	Wheat	plastid	63.25	64.74
TraesCS4B01G117900.1	Wheat	plastid	62.19	59.16
CDY16472	Canola	cytosol	19.61	28.32
CDY40616	Canola	cytosol	23.67	27.07
CDX93702	Canola	cytosol	23.67	27.07
CDX77276	Canola	cytosol	23.5	26.81
CDY18901	Canola	plastid	16.78	26.32
CDY27360	Canola	plastid	16.96	26.16
CDY37064	Canola	plastid	16.96	26.09
CDY36546	Canola	cytosol	21.91	25.89
CDY39632	Canola	cytosol	21.91	25.83
CDX74765	Canola	plastid	16.78	25.82
CDY10656	Canola	cytosol	8.66	25.0
CDY46694	Canola	cytosol	11.84	21.61
CDY17067	Canola	cytosol, nucleus	12.01	21.05
CDY39221	Canola	cytosol, endoplasmic reticulum	16.61	15.28
CDX72255	Canola	cytosol, endoplasmic reticulum	16.43	15.1
CDY28196	Canola	endoplasmic reticulum	16.43	14.95
CDX68673	Canola	extracellular	16.25	14.65
Os11t0153800-01	Rice	nucleus	0.35	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	GO:A0A078C5K0	InterPro:AAA+_ATPase
EnsemblPlants:CDX70273	ProteinID:CDX70273	ProteinID:CDX70273.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00136418001	InterPro:IPR036891	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF24	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom
InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
TIGRFAMs:TIGR00959	UniParc:UPI0004EEA8C2	SEG:seg	:	:	:

Description

BnaA10g26220D

Coordinates

chrLK031790:+:3873367..3876520

Molecular Weight (calculated)

61609.1 Da

IEP (calculated)

10.176

GRAVY (calculated)

-0.279

Length

566 amino acids

Sequence
(BLAST)

001: MEALQISSRF SVNNRVPCTQ SLTASRSSRA TFRSAFTGTA NSASSLSSKN TSTREIWSWV KSKTVGNGRS YRRSQVRAEM FGQLTSGLEA AWTKLKGEEV
101: LTKENIAEPM RDIRRALLEA DVSLPVVRRF VQSVSDQAVG MGVIRGVKPD QQLVKIVHDE LVKLMGGEVS ELQFSKSGPT VILLAGLQGV GKTTVCAKLA
201: CYLKKQGKTC MLIAGDVYRP AAIDQLVILG EQVSVPVYTA GTEVKPADIA KEGLKEAKKN NVDVVIMDTA GRLQIDKGMM DELKDVKKVL NPTEVLLVVD
301: AMTGQEAAAL VTTFNVEIGI TGAILTKLDG DSRGGAALSV KEVSGKPIKL VGRGERMEDL EPFYPNRMAG RVLGMGDVLS FVEKAQEVMR EEDAEDLQKK
401: IMSAKFDFND FLKQTRAVAK MGSMTRVLGM IPGMGKVSPA QIREAEKSLV IMEAMIEAMT PEEREKPELL AESPERRKRV ANDSGKTEQQ VSQLVAQIFQ
501: MRVKMKNLMG AMEGGSIPAL SSLEDAMKAQ QKAPPGTARR KKRKADSRKK FVESASSNPG PRGFGN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.