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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70273 Canola plastid 91.84 91.52
Bra009499.1-P Field mustard plastid 91.49 91.17
CDY41424 Canola plastid 91.13 90.97
Bra028809.1-P Field mustard plastid 87.77 87.77
CDY04905 Canola plastid 87.59 87.59
CDY14166 Canola plastid 87.06 87.06
VIT_08s0007g03160.t01 Wine grape plastid 81.74 81.31
PGSC0003DMT400022884 Potato plastid 79.79 80.5
KRH67940 Soybean plastid 79.61 79.47
Solyc09g009940.2.1 Tomato plastid 79.61 79.19
CDY14165 Canola plastid 31.56 79.11
GSMUA_Achr10P... Banana plastid 77.48 76.0
Os11t0153600-01 Rice cytosol 26.77 68.95
EES16662 Sorghum plastid 67.91 68.52
Zm00001d052556_P001 Maize plastid 66.13 68.44
KXG27759 Sorghum plastid 66.67 68.24
TraesCS4D01G115500.1 Wheat plastid 66.67 67.87
Zm00001d023431_P002 Maize plastid 67.73 67.73
Os11t0153700-01 Rice plastid 66.67 67.5
TraesCS4B01G117800.1 Wheat plastid 66.13 67.33
TraesCS4A01G197700.1 Wheat plastid 66.13 67.33
HORVU4Hr1G021950.4 Barley plastid 64.89 65.95
HORVU4Hr1G021960.1 Barley plastid 65.25 65.6
TraesCS4D01G115600.1 Wheat plastid 64.36 65.52
TraesCS4A01G197600.1 Wheat plastid 64.18 65.46
TraesCS4B01G117900.1 Wheat plastid 63.12 59.83
AT2G45770.1 Thale cress plastid 17.2 26.5
AT1G48900.1 Thale cress cytosol 22.87 26.06
AT1G15310.1 Thale cress cytosol 21.28 25.05
AT5G49500.1 Thale cress cytosol 21.1 23.94
AT5G66970.1 Thale cress cytosol 7.09 22.86
AT4G30600.1 Thale cress endoplasmic reticulum 16.84 14.98
Os11t0153800-01 Rice nucleus 0.35 1.85
Protein Annotations
Gene3D:1.10.260.30Gene3D:1.20.120.140MapMan:23.1.7.3.2PDB:2HUGGene3D:3.40.50.300PDB:3UI2
PDB:5L3REntrezGene:830273UniProt:A0A178UD49InterPro:AAA+_ATPaseProteinID:AAC64139.1ProteinID:AED90674.1
ArrayExpress:AT5G03940EnsemblPlantsGene:AT5G03940RefSeq:AT5G03940TAIR:AT5G03940RefSeq:AT5G03940-TAIR-GEnsemblPlants:AT5G03940.1
TAIR:AT5G03940.1EMBL:AY050999Unigene:At.435EMBL:BT000976ProteinID:CAB85514.1Symbol:FFC
GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005515GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005786GO:GO:0006614GO:GO:0006810GO:GO:0008150GO:GO:0008312
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0019904GO:GO:0030529GO:GO:0032991GO:GO:0043234GO:GO:0048500GO:GO:0070208
GO:GO:0080085InterPro:IPR036891HAMAP:MF_00306RefSeq:NP_196014.1ProteinID:OAO91164.1InterPro:P-loop_NTPase
UniProt:P37107PFAM:PF00448PFAM:PF02881PFAM:PF02978PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007131PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00300
PANTHER:PTHR11564PANTHER:PTHR11564:SF24SMART:SM00382SMART:SM00962SMART:SM00963InterPro:SRP54
InterPro:SRP54_GTPase_domInterPro:SRP_FfhSUPFAM:SSF47446SUPFAM:SSF52540InterPro:Signal_recog_part_SRP54_M_sfInterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_MTIGRFAMs:TIGR00959UniParc:UPI0000001773EMBL:Z21970SEG:seg:
Description
FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
Coordinates
chr5:-:1060106..1063425
Molecular Weight (calculated)
61235.9 Da
IEP (calculated)
10.127
GRAVY (calculated)
-0.208
Length
564 amino acids
Sequence
(BLAST)
001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.