Factsheet for Bra028809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Bra014106.1-P	AT2G47450.1	11306572
AT5G03940.1	Bra014106.1-P	AT2G47450.1	14517205
AT5G03940.1	Bra014106.1-P	AT2G47450.1	15292240
AT5G03940.1	Bra014106.1-P	AT2G47450.1	15632183
AT5G03940.1	Bra014106.1-P	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04905	Canola	plastid	99.11	99.11
CDY14166	Canola	plastid	96.81	96.81
CDY14165	Canola	plastid	35.28	88.44
Bra009499.1-P	Field mustard	plastid	88.65	88.34
AT5G03940.1	Thale cress	plastid	87.77	87.77
VIT_08s0007g03160.t01	Wine grape	plastid	77.84	77.42
PGSC0003DMT400022884	Potato	plastid	75.18	75.85
KRH67940	Soybean	plastid	75.18	75.04
Solyc09g009940.2.1	Tomato	plastid	75.0	74.6
GSMUA_Achr10P...	Banana	plastid	73.58	72.17
EES16662	Sorghum	plastid	66.13	66.73
Os11t0153600-01	Rice	cytosol	25.71	66.21
Zm00001d023431_P002	Maize	plastid	66.13	66.13
KXG27759	Sorghum	plastid	63.65	65.15
Zm00001d052556_P001	Maize	plastid	62.94	65.14
Os11t0153700-01	Rice	plastid	64.18	64.99
TraesCS4D01G115500.1	Wheat	plastid	63.83	64.98
TraesCS4A01G197700.1	Wheat	plastid	63.65	64.8
TraesCS4B01G117800.1	Wheat	plastid	63.48	64.62
HORVU4Hr1G021950.4	Barley	plastid	63.12	64.14
TraesCS4D01G115600.1	Wheat	plastid	62.94	64.08
TraesCS4A01G197600.1	Wheat	plastid	62.77	64.01
HORVU4Hr1G021960.1	Barley	plastid	63.12	63.46
TraesCS4B01G117900.1	Wheat	plastid	62.06	58.82
Bra039315.1-P	Field mustard	plastid	15.78	28.25
Bra014161.1-P	Field mustard	cytosol	23.4	26.61
Bra018760.1-P	Field mustard	cytosol	23.23	26.46
Bra004937.1-P	Field mustard	plastid	17.02	26.09
Bra026145.1-P	Field mustard	cytosol	21.63	25.47
Bra014039.1-P	Field mustard	cytosol	14.18	19.46
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	16.13	14.82
Bra011203.1-P	Field mustard	endoplasmic reticulum	16.13	14.63
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	11.17	11.95
Os11t0153800-01	Rice	nucleus	0.35	1.85

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra028809
EnsemblPlants:Bra028809.1	EnsemblPlants:Bra028809.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891	UniProt:M4EJ44	HAMAP:MF_00306	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF24
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh
SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959
UniParc:UPI000254303A	SEG:seg	:	:	:	:

Description

AT5G03940 (E=4e-249) FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding

Coordinates

chrA02:-:1946673..1949555

Molecular Weight (calculated)

61431.8 Da

IEP (calculated)

10.239

GRAVY (calculated)

-0.312

Length

564 amino acids

Sequence
(BLAST)

001: MESLQFSSRF SVNRVQCTQN RTTSRTSRAA CRSAFTGTTN SASLSSKSTS TREIWSWVKS KTVGQGRYRR SQVRAEMFGQ LSSGLEAAWT KLKGEDVMTK
101: ENIAEPMKDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVAAKLAYNL
201: KKQGKTCMLI AGDVYRPAAI DQLVILGEKI GVPVYTAGTE AKPADIAKQG LKEAKMNNVD VVIMDTAGRL QVDKEMMDEL KDVKRFLNPT ETLLVVDAMT
301: GQEAASLVTA FSVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPNRMAGRIL GMGDVLSFVE KAQEVMRQED AEDLQKKIMS
401: EKFDFNDLLK QTRAVAKIGS VSRVLGMIPG MGKVSPAQIR EAEKSLVIME AMIEAMTPEE KEKPELLAES PERRKRIAKD SGKTEQQVSQ LVAQIFQMRV
501: KMKNLMGAME GGANPAFTDL ADAMKAEQKG LPGTARRKKK AESRKKFVES ASSKPGPRGF GSGN

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.