Factsheet for Bra014039.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17067	Canola	cytosol, nucleus	77.13	98.14
CDY46694	Canola	cytosol	73.97	98.06
AT5G66970.1	Thale cress	cytosol	20.92	49.14
HORVU2Hr1G125480.2	Barley	cytosol	22.87	47.72
HORVU6Hr1G029680.1	Barley	cytosol	21.9	46.88
HORVU5Hr1G019120.2	Barley	cytosol	21.9	46.88
HORVU7Hr1G036330.1	Barley	cytosol	25.55	43.57
HORVU2Hr1G097520.1	Barley	cytosol	20.68	38.29
HORVU3Hr1G075590.1	Barley	cytosol	17.52	37.5
KXG37974	Sorghum	cytosol	37.71	34.75
KXG37972	Sorghum	cytosol	37.71	34.75
Solyc12g042740.1.1	Tomato	cytosol	42.09	34.67
PGSC0003DMT400073698	Potato	cytosol	42.09	34.67
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	40.63	34.5
KRH44479	Soybean	cytosol	41.36	34.34
TraesCS3B01G342900.1	Wheat	cytosol	40.39	34.3
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	41.12	34.14
VIT_09s0002g07290.t01	Wine grape	cytosol	40.88	33.94
Bra026145.1-P	Field mustard	cytosol	39.42	33.82
EES19782	Sorghum	cytosol	39.66	33.82
GSMUA_Achr8P03120_001	Banana	cytosol	40.63	33.6
PGSC0003DMT400001674	Potato	cytosol	40.63	33.6
Os05t0509500-01	Rice	plasma membrane	39.42	33.54
Bra018760.1-P	Field mustard	cytosol	40.39	33.54
Bra014161.1-P	Field mustard	cytosol	40.39	33.47
Os01t0772800-01	Rice	plasma membrane	40.15	33.27
KRH09713	Soybean	cytosol	40.15	33.07
EES01544	Sorghum	cytosol	39.9	33.06
Zm00001d012652_P003	Maize	extracellular	40.15	33.0
KRH23593	Soybean	cytosol	39.9	32.8
TraesCS1B01G340700.1	Wheat	cytosol	39.42	32.79
Zm00001d043303_P001	Maize	cytosol	39.17	32.59
TraesCS1B01G340600.1	Wheat	golgi, plastid	39.17	32.39
HORVU2Hr1G020570.1	Barley	plasma membrane	38.93	32.19
TraesCS1D01G329300.1	Wheat	cytosol	38.93	32.19
Zm00001d038661_P001	Maize	cytosol	37.71	32.16
HORVU1Hr1G077990.4	Barley	cytosol	38.69	31.55
KXG34125	Sorghum	cytosol	35.77	29.58
Solyc03g116810.2.1	Tomato	nucleus	40.88	28.47
TraesCS1A01G075500.1	Wheat	golgi	26.03	26.68
GSMUA_Achr9P25680_001	Banana	cytosol	26.03	24.54
Bra004937.1-P	Field mustard	plastid	14.6	16.3
Bra039315.1-P	Field mustard	plastid	11.68	15.24
Bra009499.1-P	Field mustard	plastid	20.19	14.66
Bra028809.1-P	Field mustard	plastid	19.46	14.18
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	15.82	10.59
Bra011203.1-P	Field mustard	endoplasmic reticulum	15.57	10.29
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	9.49	7.4

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra014039	EnsemblPlants:Bra014039.1	EnsemblPlants:Bra014039.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500
UniProt:M4DC27	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02978	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5
SMART:SM00962	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540
InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI0002546CC5	SEG:seg	:	:	:

Description

AT1G48900 (E=2e-055) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)

Coordinates

chrA08:-:4253372..4255217

Molecular Weight (calculated)

46410.5 Da

IEP (calculated)

8.915

GRAVY (calculated)

-0.271

Length

411 amino acids

Sequence
(BLAST)

001: MVPTEIKNLL ARSFEQMRIT PILDDTTLKN CSNEIARALL DADFPESLVA EFEGKIQTVI DTNEASEGKC NLIYKTILEE LSTILDPRKS ASIQGKNESI
101: VMFIGLQGSE KSYTCARYAR YHMTMGFKPA LVCADTFAID AFDLLKKASK DKVPVYRSRK RDPAKIASGG IAKLRKHNRD FIVVDTTSRH TECFALLVEM
201: RRLANAVKPD LVIFVIDGSV GKDAFEQARA FREGFPAGVA IVTKIKTYPK SLGALAAVAA AECPMIYSTK GEKGEEFKVF EAESFVRQLM PANQDHERED
301: KTPELAYTLR KMHAYFSKAC QGKVLRGPRP LVDIPTMKLY IQIMDNMTSE ELEKSEISKE RMVHLAEQSN VDVIQVVGMM TVYKRKAKAW LEIEERMGKL
401: NSIYNKWYLQ K

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.