Factsheet for PGSC0003DMT400001674

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	89.94	90.3
KRH44479	Soybean	cytosol	89.94	90.3
PGSC0003DMT400073698	Potato	cytosol	90.34	89.98
KRH09713	Soybean	cytosol	90.14	89.78
KRH23593	Soybean	cytosol	89.54	89.0
VIT_09s0002g07290.t01	Wine grape	cytosol	88.13	88.48
GSMUA_Achr8P03120_001	Banana	cytosol	87.73	87.73
CDY16472	Canola	cytosol	68.61	86.99
EES01544	Sorghum	cytosol	86.52	86.69
AT1G48900.1	Thale cress	cytosol	85.92	86.26
Zm00001d012652_P003	Maize	extracellular	86.72	86.2
Os01t0772800-01	Rice	plasma membrane	85.92	86.09
Zm00001d043303_P001	Maize	cytosol	85.31	85.83
CDY40616	Canola	cytosol	85.11	85.45
Bra018760.1-P	Field mustard	cytosol	85.11	85.45
CDX93702	Canola	cytosol	85.11	85.45
Bra014161.1-P	Field mustard	cytosol	84.71	84.88
CDX77276	Canola	cytosol	84.51	84.68
Solyc03g116810.2.1	Tomato	nucleus	98.79	83.22
HORVU2Hr1G020570.1	Barley	plasma membrane	81.89	81.89
TraesCS1B01G340600.1	Wheat	golgi, plastid	81.69	81.69
TraesCS1A01G327200.1	Wheat	cytosol	81.69	81.69
AT1G15310.1	Thale cress	cytosol	78.27	81.21
TraesCS1D01G329300.1	Wheat	cytosol	80.68	80.68
HORVU1Hr1G077990.4	Barley	cytosol	81.49	80.36
Bra026145.1-P	Field mustard	cytosol	76.46	79.33
HORVU3Hr1G075590.1	Barley	cytosol	30.58	79.17
CDY36546	Canola	cytosol	76.06	78.91
CDY39632	Canola	cytosol	76.06	78.75
HORVU6Hr1G029680.1	Barley	cytosol	29.98	77.6
HORVU5Hr1G019120.2	Barley	cytosol	29.98	77.6
AT5G49500.1	Thale cress	cytosol	77.46	77.46
HORVU2Hr1G125480.2	Barley	cytosol	30.18	76.14
HORVU7Hr1G036330.1	Barley	cytosol	36.42	75.1
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	72.64	74.59
Os05t0509500-01	Rice	plasma membrane	72.03	74.12
TraesCS3A01G322800.1	Wheat	mitochondrion	71.63	73.55
CDY10656	Canola	cytosol	28.97	73.47
TraesCS3B01G342900.1	Wheat	cytosol	71.43	73.35
TraesCS1A01G327300.1	Wheat	cytosol	72.64	73.23
HORVU2Hr1G097520.1	Barley	cytosol	32.6	72.97
TraesCS1B01G340700.1	Wheat	cytosol	72.43	72.87
EES19782	Sorghum	cytosol	70.42	72.61
Zm00001d038661_P001	Maize	cytosol	68.21	70.33
KXG37974	Sorghum	cytosol	58.55	65.25
KXG37972	Sorghum	cytosol	58.15	64.8
KXG34125	Sorghum	cytosol	55.33	55.33
CDY17067	Canola	cytosol, nucleus	27.77	42.72
CDY46694	Canola	cytosol	26.56	42.58
AT5G66970.1	Thale cress	cytosol	14.69	41.71
Bra014039.1-P	Field mustard	cytosol	33.6	40.63
PGSC0003DMT400022884	Potato	plastid	25.96	23.08
PGSC0003DMT400071384	Potato	plastid	16.1	21.74
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	17.1	13.73

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:102604490	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787
GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891	UniProt:M0ZIW6	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	EnsemblPlantsGene:PGSC0003DMG400000625	PGSC:PGSC0003DMG400000625
EnsemblPlants:PGSC0003DMT400001674	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364
SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425
UniParc:UPI000296DF5B	RefSeq:XP_006364228.1	SEG:seg	:	:	:

Description

Signal recognition particle 54 kDa protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000625]

Coordinates

chr3:+:56566693..56572595

Molecular Weight (calculated)

54888.4 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.242

Length

497 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALQQMSNA TIIDEKVLNE CLNEITRALL QADVQFKLVR DMSTNIKKIV NLEDLAAGHN KRRIIQQAVY NELCKILDPG KPAFTLKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYHHQKRGW KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPMK IAVDGVETFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFRQSV AVGAVIITKM DGHAKGGGAL SAVAATQSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDL
301: SGLVNKIQDV VPMDQQPELL QKLSEGHFTL RIMYEQFQNM LKMGPLGQVF SMLPGFSAEM MPQGREKESQ AKFKRYMTMM DSMTDEELDS TNPKILTESR
401: IMRIARGSGR LVHEVMEMLE EYKRLAKIFS KMKGLKIPKK GDMSSLSRNM NAQNMSKVLP PQMLKQIGGM GGLQNLMKQM GSAKDMMGMF GGGGGGE

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.