Factsheet for Zm00001d043303_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01544	Sorghum	cytosol	97.17	96.77
Zm00001d012652_P003	Maize	extracellular	96.76	95.6
Os01t0772800-01	Rice	plasma membrane	94.53	94.15
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	89.47	89.29
KRH44479	Soybean	cytosol	88.87	88.69
KRH09713	Soybean	cytosol	89.07	88.18
KRH23593	Soybean	cytosol	88.87	87.8
Solyc12g042740.1.1	Tomato	cytosol	88.26	87.37
VIT_09s0002g07290.t01	Wine grape	cytosol	87.25	87.07
PGSC0003DMT400073698	Potato	cytosol	87.04	86.17
PGSC0003DMT400001674	Potato	cytosol	85.83	85.31
CDY16472	Canola	cytosol	67.21	84.69
AT1G48900.1	Thale cress	cytosol	83.4	83.23
Bra014161.1-P	Field mustard	cytosol	82.19	81.85
CDX77276	Canola	cytosol	81.98	81.65
CDX93702	Canola	cytosol	81.78	81.62
CDY40616	Canola	cytosol	81.78	81.62
Bra018760.1-P	Field mustard	cytosol	81.78	81.62
HORVU5Hr1G019120.2	Barley	cytosol	31.58	81.25
HORVU6Hr1G029680.1	Barley	cytosol	31.58	81.25
HORVU3Hr1G075590.1	Barley	cytosol	31.58	81.25
HORVU7Hr1G036330.1	Barley	cytosol	39.27	80.5
HORVU2Hr1G125480.2	Barley	cytosol	31.98	80.2
HORVU2Hr1G097520.1	Barley	cytosol	35.83	79.73
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	77.94	79.55
TraesCS3A01G322800.1	Wheat	mitochondrion	76.92	78.51
AT1G15310.1	Thale cress	cytosol	75.91	78.29
TraesCS3B01G342900.1	Wheat	cytosol	76.52	78.1
CDY39632	Canola	cytosol	73.68	75.83
Bra026145.1-P	Field mustard	cytosol	73.48	75.78
CDY36546	Canola	cytosol	73.28	75.57
AT5G49500.1	Thale cress	cytosol	75.51	75.05
Zm00001d038661_P001	Maize	cytosol	72.27	74.07
Solyc03g116810.2.1	Tomato	nucleus	85.83	71.86
CDY10656	Canola	cytosol	27.33	68.88
GSMUA_Achr9P25680_001	Banana	cytosol	53.24	60.32
CDY46694	Canola	cytosol	26.52	42.26
CDY17067	Canola	cytosol, nucleus	27.53	42.11
AT5G66970.1	Thale cress	cytosol	14.57	41.14
Bra014039.1-P	Field mustard	cytosol	32.59	39.17
Zm00001d023431_P002	Maize	plastid	27.73	24.29
Zm00001d052556_P001	Maize	plastid	26.72	24.22
Zm00001d042044_P001	Maize	plastid	17.81	20.51
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.61	13.79

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:100502496	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:BT088360	UniProt:C4JC13	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891
HAMAP:MF_00306	ProteinID:ONM37484.1	ProteinID:ONM37485.1	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881
PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364
SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425
UniParc:UPI00019AA9BB	EnsemblPlantsGene:Zm00001d043303	EnsemblPlants:Zm00001d043303_P001	EnsemblPlants:Zm00001d043303_T001	SEG:seg	:

Description

Signal recognition particle 54 kDa protein 3

Coordinates

chr3:-:195191331..195203417

Molecular Weight (calculated)

54435.9 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.223

Length

494 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDEKVLND CLNEISRALL QADVQFKMVR DMQANIKRIV NLEALAAGTN KRRIMQQAVF TELCNMLDPG KPSFTPKKGK
101: PSVVMFVGLQ GSGKTTTCSK YAYYHQKKGF KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGVERFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHID DFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV IPTDQQPDLL QKLSEGSFSL RLMYEQFQNL LKMGPIGQVF SMLPGFSAEL MPKGHEKESQ AKIKRYMTMM DSMTDAELDS TNPKLMTESR
401: IIRIARGSGR PVRDVMDMLE EYKRLAKIWG KMKGLKLQKK GDMSALTRNM NVQQMSKALP PQMLKQIGGM GGLQSLMKQM GSKEMSGMFG GMGG

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.