Factsheet for Zm00001d012652_P003

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01544	Sorghum	cytosol	98.0	98.79
Zm00001d043303_P001	Maize	cytosol	95.6	96.76
Os01t0772800-01	Rice	plasma membrane	95.2	95.97
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	89.8	90.71
KRH44479	Soybean	cytosol	89.6	90.51
KRH09713	Soybean	cytosol	89.4	89.58
Solyc12g042740.1.1	Tomato	cytosol	89.4	89.58
KRH23593	Soybean	cytosol	89.2	89.2
VIT_09s0002g07290.t01	Wine grape	cytosol	88.2	89.09
PGSC0003DMT400073698	Potato	cytosol	88.2	88.38
PGSC0003DMT400001674	Potato	cytosol	86.2	86.72
CDY16472	Canola	cytosol	67.6	86.22
AT1G48900.1	Thale cress	cytosol	84.2	85.05
CDX93702	Canola	cytosol	82.6	83.43
CDY40616	Canola	cytosol	82.6	83.43
Bra018760.1-P	Field mustard	cytosol	82.6	83.43
Bra014161.1-P	Field mustard	cytosol	82.6	83.27
CDX77276	Canola	cytosol	82.4	83.06
HORVU3Hr1G075590.1	Barley	cytosol	31.4	81.77
HORVU5Hr1G019120.2	Barley	cytosol	31.0	80.73
HORVU6Hr1G029680.1	Barley	cytosol	31.0	80.73
HORVU2Hr1G125480.2	Barley	cytosol	31.4	79.7
HORVU7Hr1G036330.1	Barley	cytosol	38.4	79.67
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	76.8	79.34
AT1G15310.1	Thale cress	cytosol	75.8	79.12
HORVU2Hr1G097520.1	Barley	cytosol	35.0	78.83
TraesCS3A01G322800.1	Wheat	mitochondrion	76.2	78.72
TraesCS3B01G342900.1	Wheat	cytosol	75.8	78.31
CDY36546	Canola	cytosol	72.8	75.99
Bra026145.1-P	Field mustard	cytosol	72.8	75.99
CDY39632	Canola	cytosol	72.8	75.83
AT5G49500.1	Thale cress	cytosol	75.0	75.45
Zm00001d038661_P001	Maize	cytosol	70.8	73.44
Solyc03g116810.2.1	Tomato	nucleus	86.2	73.05
CDY10656	Canola	cytosol	27.2	69.39
GSMUA_Achr9P25680_001	Banana	cytosol	53.4	61.24
CDY46694	Canola	cytosol	26.8	43.23
CDY17067	Canola	cytosol, nucleus	27.8	43.03
AT5G66970.1	Thale cress	cytosol	14.4	41.14
Bra014039.1-P	Field mustard	cytosol	33.0	40.15
Zm00001d023431_P002	Maize	plastid	28.0	24.82
Zm00001d052556_P001	Maize	plastid	26.8	24.59
Zm00001d042044_P001	Maize	plastid	17.4	20.28
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.2	13.63

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	UniProt:A0A1D6GAK2	InterPro:AAA+_ATPase
ProteinID:AQL00132.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf
InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI00084463B7	EnsemblPlantsGene:Zm00001d012652	EnsemblPlants:Zm00001d012652_P003
EnsemblPlants:Zm00001d012652_T003	SEG:seg	:	:	:	:

Description

Signal recognition particle 54 kDa protein 3

Coordinates

chr8:+:177983385..177988780

Molecular Weight (calculated)

55178.9 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.189

Length

500 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDEKVLNE CLNEISRALL QADVQFKMVR DMQANIKRIV NLEALAAGTN KRRIMQQAVF TELCTMLDPG KPSFTPKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYYHQKKGF KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGVERFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEVFDVKPF VSRLLGMGDW
301: AGFMDKIHEV VPTDQQPELL QKLSEGSFTL RLMYEQFQNI LKMGPIGQVF SMLPGFSAEL MPKGHEKESQ AKIKRYMTMM DSMTDAVFVP ELDSTNPKLM
401: TESRIIRIAR GSGRPVRDVI DMLEEYKRLA KIWGKMKGLK IPKKGEMSAL SRNMNVQHMS KVLPPQMLKQ IGGMGGLQSL MKQMGSKEMS GMFGGMGGER

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.