Factsheet for GSMUA_Achr9P25680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03120_001	Banana	cytosol	64.68	56.74
HORVU6Hr1G029680.1	Barley	cytosol	23.85	54.17
HORVU5Hr1G019120.2	Barley	cytosol	23.85	54.17
EES01544	Sorghum	cytosol	61.01	53.63
Os01t0772800-01	Rice	plasma membrane	60.78	53.43
Zm00001d012652_P003	Maize	extracellular	61.24	53.4
Zm00001d043303_P001	Maize	cytosol	60.32	53.24
HORVU2Hr1G125480.2	Barley	cytosol	23.39	51.78
HORVU7Hr1G036330.1	Barley	cytosol	28.21	51.04
HORVU2Hr1G020570.1	Barley	plasma membrane	58.03	50.91
HORVU2Hr1G097520.1	Barley	cytosol	25.92	50.9
AT1G48900.1	Thale cress	cytosol	57.57	50.71
TraesCS1B01G340600.1	Wheat	golgi, plastid	57.8	50.7
TraesCS1A01G327200.1	Wheat	cytosol	57.8	50.7
CDX77276	Canola	cytosol	57.34	50.4
CDY40616	Canola	cytosol	57.11	50.3
Bra018760.1-P	Field mustard	cytosol	57.11	50.3
CDX93702	Canola	cytosol	57.11	50.3
TraesCS1D01G329300.1	Wheat	cytosol	57.34	50.3
Bra014161.1-P	Field mustard	cytosol	57.11	50.2
CDY16472	Canola	cytosol	44.95	50.0
HORVU1Hr1G077990.4	Barley	cytosol	57.57	49.8
AT1G15310.1	Thale cress	cytosol	54.13	49.27
CDY36546	Canola	cytosol	53.44	48.64
Os05t0509500-01	Rice	plasma membrane	52.98	47.83
Bra026145.1-P	Field mustard	cytosol	52.52	47.81
CDY39632	Canola	cytosol	52.29	47.5
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	51.38	46.28
EES19782	Sorghum	cytosol	51.15	46.27
TraesCS3A01G322800.1	Wheat	mitochondrion	50.69	45.66
TraesCS1A01G327300.1	Wheat	cytosol	51.38	45.44
TraesCS3B01G342900.1	Wheat	cytosol	50.23	45.25
AT5G49500.1	Thale cress	cytosol	51.38	45.07
TraesCS1B01G340700.1	Wheat	cytosol	50.92	44.94
Zm00001d038661_P001	Maize	cytosol	49.31	44.61
CDY10656	Canola	cytosol	19.95	44.39
KXG37972	Sorghum	cytosol	44.72	43.72
KXG37974	Sorghum	cytosol	44.5	43.5
HORVU3Hr1G075590.1	Barley	cytosol	18.58	42.19
KXG34125	Sorghum	cytosol	41.51	36.42
CDY17067	Canola	cytosol, nucleus	21.1	28.48
CDY46694	Canola	cytosol	19.95	28.06
AT5G66970.1	Thale cress	cytosol	11.24	28.0
Bra014039.1-P	Field mustard	cytosol	24.54	26.03
GSMUA_Achr5P20650_001	Banana	cytosol	15.6	20.18
GSMUA_Achr11P...	Banana	plastid	13.3	15.18
GSMUA_Achr10P...	Banana	plastid	19.72	14.96
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	15.37	14.08
GSMUA_Achr11P...	Banana	endoplasmic reticulum	15.6	12.08

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSMUA_Achr9G25680_001	EnsemblPlants:GSMUA_Achr9P25680_001
EnsemblPlants:GSMUA_Achr9T25680_001	InterPro:IPR036891	UniProt:M0U3H5	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02978
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00962	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom
SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI0002958192

Description

Signal recognition particle 54 kDa protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G25680_001]

Coordinates

chr9:-:30207627..30213073

Molecular Weight (calculated)

49704.4 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.251

Length

436 amino acids

Sequence
(BLAST)

001: MVLAQWDEKV LSKYLNDVSH MLLSSSDAQF KLVRDMQANI KRIVNLAAGH NKHRTIQQAV FNEHCKILDP GKPSFTPKKG KTSVVIFVGL QGSGKTTTCT
101: KHAYYYQKKG WKPTLFCADT FRAGAFDQFK QKCNKNQNSL LWKVLLDNME SDPVKIAVDG VETFKKENRD LIFVDTRGQH KQEAFCRYIN TDLIIFVMES
201: SIGQATFDQA QAFKISVAIG AVIIIFKYNL QDQQSDSDYC YLVCLQSCSH QKTSPFIGTG EHPEEFEIFD VKPFVSHLLR KLYPAAYVPA VQKHFSKWVL
301: QVRLTYGSEY LVFPRARYFC YVQLFSMLPW FSAKLMSKGH EKESRAKIKL FMTIMDSMTN AELDGTNPKL MNEYHTLHTA RGLDRPVRDV LPPQMLKQIG
401: GMGGLQNFMK QMGLKDMGGL VGSSDEGTNR IILYII

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.