Factsheet for GSMUA_Achr8P03120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	92.15	92.53
KRH44479	Soybean	cytosol	92.15	92.53
KRH09713	Soybean	cytosol	92.35	91.98
Solyc12g042740.1.1	Tomato	cytosol	92.15	91.78
VIT_09s0002g07290.t01	Wine grape	cytosol	91.35	91.72
KRH23593	Soybean	cytosol	92.15	91.6
PGSC0003DMT400073698	Potato	cytosol	90.95	90.58
PGSC0003DMT400001674	Potato	cytosol	87.73	87.73
CDY16472	Canola	cytosol	69.01	87.5
AT1G48900.1	Thale cress	cytosol	87.12	87.47
CDX93702	Canola	cytosol	85.31	85.66
Bra018760.1-P	Field mustard	cytosol	85.31	85.66
CDY40616	Canola	cytosol	85.31	85.66
CDX77276	Canola	cytosol	85.31	85.48
Bra014161.1-P	Field mustard	cytosol	85.11	85.28
AT1G15310.1	Thale cress	cytosol	77.46	80.38
Bra026145.1-P	Field mustard	cytosol	75.05	77.87
CDY39632	Canola	cytosol	75.05	77.71
CDY36546	Canola	cytosol	74.85	77.66
AT5G49500.1	Thale cress	cytosol	77.46	77.46
Solyc03g116810.2.1	Tomato	nucleus	87.73	73.9
CDY10656	Canola	cytosol	28.37	71.94
GSMUA_Achr9P25680_001	Banana	cytosol	56.74	64.68
CDY46694	Canola	cytosol	26.96	43.23
CDY17067	Canola	cytosol, nucleus	27.97	43.03
Bra014039.1-P	Field mustard	cytosol	33.6	40.63
AT5G66970.1	Thale cress	cytosol	14.08	40.0
GSMUA_Achr5P20650_001	Banana	cytosol	17.3	25.52
GSMUA_Achr10P...	Banana	plastid	27.77	24.0
GSMUA_Achr11P...	Banana	plastid	16.3	21.2
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	17.3	18.07
GSMUA_Achr11P...	Banana	endoplasmic reticulum	17.1	15.1

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529
GO:GO:0045047	GO:GO:0048500	EnsemblPlantsGene:GSMUA_Achr8G03120_001	EnsemblPlants:GSMUA_Achr8P03120_001	EnsemblPlants:GSMUA_Achr8T03120_001	InterPro:IPR036891
UniProt:M0TM64	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978
ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI000296E141
SEG:seg	:	:	:	:	:

Description

Signal recognition particle 54 kDa protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G03120_001]

Coordinates

chr8:+:2149686..2160067

Molecular Weight (calculated)

55068.5 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.296

Length

497 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI ARALQQMSNA TIIDEKVLSE CLNEISRALL QSDVQFKLVR DMQANIKRIV NLDDLAAGHN KRRIIQQAVF NELCKMLDPG KPSFTPKKGK
101: TSVVMFVGLQ GSGKTTTCTK YAYYHQKKGW KPALVCADTF RAGAFDQLKQ NATKTKIPYY GSYMESDPVK IAVEGVETFK KENRDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLIIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHME EFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV VPTDQQPELL QKLSEGSFTL RLMYEQFQNI LKMGPIGQVF SMLPGFSAEL MPKGHEKESQ AKIKRYMTMM DSMTNAELDS TNPKLMNESR
401: IMRIARGSGR SVRDVTEMLE EYKRLAKIWS KMKGLKIPKK GEMSALSRNM NAQQMSKVLP PQMLKQIGGM GGLQSLMKQM GSKDMGGMGG MFGRGDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.