CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026145.1-P	Field mustard	cytosol	96.45	96.45
CDY39632	Canola	cytosol	94.36	94.17
AT1G15310.1	Thale cress	cytosol	82.25	82.25
CDX77276	Canola	cytosol	84.13	81.25
CDY16472	Canola	cytosol	65.97	80.61
CDY40616	Canola	cytosol	83.09	80.4
CDX93702	Canola	cytosol	83.09	80.4
HORVU6Hr1G029680.1	Barley	cytosol	31.11	77.6
HORVU5Hr1G019120.2	Barley	cytosol	31.11	77.6
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	79.33	76.77
KRH44479	Soybean	cytosol	79.33	76.77
HORVU2Hr1G125480.2	Barley	cytosol	31.52	76.65
CDY10656	Canola	cytosol	31.32	76.53
VIT_09s0002g07290.t01	Wine grape	cytosol	78.71	76.16
PGSC0003DMT400001674	Potato	cytosol	78.91	76.06
KRH09713	Soybean	cytosol	79.12	75.95
AT5G49500.1	Thale cress	cytosol	78.71	75.86
KRH23593	Soybean	cytosol	79.12	75.8
Solyc12g042740.1.1	Tomato	cytosol	78.71	75.55
GSMUA_Achr8P03120_001	Banana	cytosol	77.66	74.85
PGSC0003DMT400073698	Potato	cytosol	77.66	74.55
HORVU3Hr1G075590.1	Barley	cytosol	29.85	74.48
HORVU7Hr1G036330.1	Barley	cytosol	37.37	74.27
EES01544	Sorghum	cytosol	75.99	73.39
Zm00001d043303_P001	Maize	cytosol	75.57	73.28
Os01t0772800-01	Rice	plasma membrane	75.57	72.98
Zm00001d012652_P003	Maize	extracellular	75.99	72.8
HORVU2Hr1G020570.1	Barley	plasma membrane	73.9	71.23
TraesCS1B01G340600.1	Wheat	golgi, plastid	73.9	71.23
TraesCS1D01G329300.1	Wheat	cytosol	73.49	70.83
HORVU2Hr1G097520.1	Barley	cytosol	32.36	69.82
HORVU1Hr1G077990.4	Barley	cytosol	73.28	69.64
Os05t0509500-01	Rice	plasma membrane	68.89	68.32
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	67.64	66.94
EES19782	Sorghum	cytosol	66.81	66.39
TraesCS3B01G342900.1	Wheat	cytosol	67.01	66.32
TraesCS1B01G340700.1	Wheat	cytosol	68.27	66.19
Zm00001d038661_P001	Maize	cytosol	65.76	65.35
Solyc03g116810.2.1	Tomato	nucleus	79.33	64.41
KXG37974	Sorghum	cytosol	59.5	63.9
KXG37972	Sorghum	cytosol	59.29	63.68
KXG34125	Sorghum	cytosol	55.53	53.52
GSMUA_Achr9P25680_001	Banana	cytosol	48.64	53.44
CDY46694	Canola	cytosol	26.3	40.65
CDY17067	Canola	cytosol, nucleus	27.35	40.56
CDY18901	Canola	plastid	18.16	24.1
CDX74765	Canola	plastid	18.16	23.64
CDY27360	Canola	plastid	17.75	23.16
CDY37064	Canola	plastid	17.75	23.1
CDY41424	Canola	plastid	25.89	21.95
CDX70273	Canola	plastid	25.89	21.91
CDY04905	Canola	plastid	25.47	21.63
CDY14166	Canola	plastid	25.47	21.63
CDY14165	Canola	plastid	7.31	15.56
CDY39221	Canola	cytosol, endoplasmic reticulum	17.54	13.66
CDX72255	Canola	cytosol, endoplasmic reticulum	17.54	13.64
CDY28196	Canola	endoplasmic reticulum	17.54	13.5
CDX68673	Canola	extracellular	17.54	13.38

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	GO:A0A078HFM1	UniProt:A0A078HFM1
InterPro:AAA+_ATPase	EnsemblPlants:CDY36546	ProteinID:CDY36546	ProteinID:CDY36546.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047
GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00062226001	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382
SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk
SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
TIGRFAMs:TIGR01425	UniParc:UPI0004EE94CC	SEG:seg	:	:	:

Description

BnaA06g09990DSignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFM1]

Coordinates

chrLK032378:-:107991..110100

Molecular Weight (calculated)

53034.9 Da

IEP (calculated)

9.622

GRAVY (calculated)

-0.235

Length

479 amino acids

Sequence
(BLAST)

001: MVLAELGGRI THAIHQMRNV TIIDEKALNE CLNEITRALL QSDVSFALVK EMQTNIKKIV NLQDLAAGHN KRRIIEQAIF GELCKMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD QFEVFDVKPF VNRLLGMGDL
301: SGLVDKLQEV VPKDQQAEIM EKISKGNFSM RMMYDQYQSV LSSGPLNQLY SMLPGVSAQM MPEGESEAKI KLYMTVMDSM TNEELDSSNL KAFNESRIMR
401: IARGSGRIVR EVMEMLEEYR KMAKRFSNLK GFKMPKNGDM SSNKSAQKLI SKVMSPQMLQ RFGGMSGLQS LMRQMGTNI

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.