Factsheet for TraesCS1B01G340700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G327300.1	Wheat	cytosol	98.18	98.38
TraesCS1B01G340600.1	Wheat	golgi, plastid	81.78	81.29
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	74.29	74.14
Solyc12g042740.1.1	Tomato	cytosol	74.49	73.75
Os05t0509500-01	Rice	plasma membrane	72.06	73.71
KRH44479	Soybean	cytosol	73.68	73.54
PGSC0003DMT400073698	Potato	cytosol	74.09	73.35
KRH09713	Soybean	cytosol	74.09	73.35
VIT_09s0002g07290.t01	Wine grape	cytosol	73.48	73.33
KRH23593	Soybean	cytosol	73.48	72.6
PGSC0003DMT400001674	Potato	cytosol	72.87	72.43
CDY16472	Canola	cytosol	57.29	72.19
TraesCS3B01G342900.1	Wheat	cytosol	70.65	72.11
AT1G48900.1	Thale cress	cytosol	71.86	71.72
Bra014161.1-P	Field mustard	cytosol	71.05	70.77
CDX77276	Canola	cytosol	71.05	70.77
EES19782	Sorghum	cytosol	68.42	70.12
CDY40616	Canola	cytosol	70.04	69.9
Bra018760.1-P	Field mustard	cytosol	70.04	69.9
CDX93702	Canola	cytosol	70.04	69.9
AT1G15310.1	Thale cress	cytosol	67.61	69.73
Zm00001d038661_P001	Maize	cytosol	66.8	68.46
CDY36546	Canola	cytosol	66.19	68.27
Bra026145.1-P	Field mustard	cytosol	65.99	68.06
CDY39632	Canola	cytosol	65.18	67.08
KXG37972	Sorghum	cytosol	58.5	64.8
KXG37974	Sorghum	cytosol	58.3	64.57
AT5G49500.1	Thale cress	cytosol	64.17	63.78
CDY10656	Canola	cytosol	25.1	63.27
Solyc03g116810.2.1	Tomato	nucleus	72.87	61.02
KXG34125	Sorghum	cytosol	56.68	56.34
GSMUA_Achr9P25680_001	Banana	cytosol	44.94	50.92
CDY46694	Canola	cytosol	26.72	42.58
CDY17067	Canola	cytosol, nucleus	27.73	42.41
AT5G66970.1	Thale cress	cytosol	13.97	39.43
Bra014039.1-P	Field mustard	cytosol	32.79	39.42
TraesCS3B01G561300.1	Wheat	plastid	16.4	22.69
TraesCS4B01G117800.1	Wheat	plastid	23.89	21.3
TraesCS4B01G117900.1	Wheat	plastid	25.51	21.18
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	18.22	13.95
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	16.8	13.65

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891
HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540
InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	EnsemblPlantsGene:TraesCS1B01G340700	EnsemblPlants:TraesCS1B01G340700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:568643134..568645571

Molecular Weight (calculated)

53999.4 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.180

Length

494 amino acids

Sequence
(BLAST)

001: MVLAELGGSI SRALTRMSSA TVVDENVFRE CLNEIARALM QADVRFKMVC DLQANIKKSV NLEALATGTN KRRIIETAVG KELCKMLDPG KPAFVPKKGK
101: PNVVMFVGLQ GSGKTTTCTK YAHYHQRKGF KPSLVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGLEKFR QEKSDLIIID TSGRHMQEAA
201: LFEEMRQVAE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA AVGAVIITKL DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFDVFNVEPF VGRLLGRGDL
301: PGLLDKMESI VPADQQSELV AKLAEGAFTL RLMYEQFQNL LKMGPMGQIF SMLPGFSSEL MPKGQEKQSK EKIKRYMTIM DSMTAAELDS KNPKLMTESR
401: ILRVARGSGR QVKDVTDMLE EYKRLAKMWS KLNVSKLIPP NGKMSDQAIQ KMLKALPPQV VQQMGGKSAF EALVKQMGGG KDMSKMLAAM KGGA

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.