CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038661_P001	Maize	cytosol	88.38	88.38
Os05t0509500-01	Rice	plasma membrane	74.9	74.74
EES01544	Sorghum	cytosol	76.14	73.99
KXG37974	Sorghum	cytosol	68.26	73.77
KXG37972	Sorghum	cytosol	67.63	73.09
HORVU2Hr1G020570.1	Barley	plasma membrane	74.69	72.43
TraesCS1B01G340600.1	Wheat	golgi, plastid	74.69	72.43
TraesCS1A01G327200.1	Wheat	cytosol	74.69	72.43
TraesCS1D01G329300.1	Wheat	cytosol	74.48	72.23
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	73.44	71.52
Solyc12g042740.1.1	Tomato	cytosol	73.86	71.34
KRH44479	Soybean	cytosol	73.24	71.31
KRH09713	Soybean	cytosol	73.65	71.14
HORVU1Hr1G077990.4	Barley	cytosol	74.07	70.83
KRH23593	Soybean	cytosol	73.44	70.8
PGSC0003DMT400073698	Potato	cytosol	73.24	70.74
VIT_09s0002g07290.t01	Wine grape	cytosol	72.61	70.71
PGSC0003DMT400001674	Potato	cytosol	72.61	70.42
CDY16472	Canola	cytosol	56.43	69.39
TraesCS1A01G327300.1	Wheat	cytosol	70.75	69.17
TraesCS1B01G340700.1	Wheat	cytosol	70.12	68.42
CDX77276	Canola	cytosol	69.92	67.94
Bra014161.1-P	Field mustard	cytosol	69.92	67.94
AT1G48900.1	Thale cress	cytosol	69.71	67.88
Bra018760.1-P	Field mustard	cytosol	69.71	67.88
CDX93702	Canola	cytosol	69.71	67.88
CDY40616	Canola	cytosol	69.71	67.88
AT1G15310.1	Thale cress	cytosol	67.22	67.64
CDY36546	Canola	cytosol	66.39	66.81
Bra026145.1-P	Field mustard	cytosol	65.98	66.39
CDY39632	Canola	cytosol	65.77	66.04
CDY10656	Canola	cytosol	26.76	65.82
AT5G49500.1	Thale cress	cytosol	64.94	62.98
KXG34125	Sorghum	cytosol	62.24	60.36
Solyc03g116810.2.1	Tomato	nucleus	73.24	59.83
GSMUA_Achr9P25680_001	Banana	cytosol	46.27	51.15
CDY46694	Canola	cytosol	27.59	42.9
CDY17067	Canola	cytosol, nucleus	28.42	42.41
AT5G66970.1	Thale cress	cytosol	14.73	40.57
Bra014039.1-P	Field mustard	cytosol	33.82	39.66
EES16662	Sorghum	plastid	27.18	23.43
EES04254	Sorghum	plastid	17.22	22.68
KXG27759	Sorghum	plastid	24.69	21.6
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.43	13.46
EES17686	Sorghum	endoplasmic reticulum, extracellular	16.18	13.27

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	EntrezGene:8067485	InterPro:AAA+_ATPase
UniProt:C5Z0T3	EnsemblPlants:EES19782	ProteinID:EES19782	ProteinID:EES19782.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047
GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881
PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962
SMART:SM00963	EnsemblPlantsGene:SORBI_3009G191700	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk
SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M
TIGRFAMs:TIGR01425	UniParc:UPI0001A88FF8	RefSeq:XP_002441352.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:54366145..54369271

Molecular Weight (calculated)

53058.8 Da

IEP (calculated)

9.881

GRAVY (calculated)

-0.189

Length

482 amino acids

Sequence
(BLAST)

001: MVLAELGGSI ARALSRMSNA TVVDEKVLAD CLNEICRALL QADVRFETVR DVKANIKRVV NLDALAAGTN KRRIIQQAVV DEIRRMLDPG KPSFTPSKGK
101: PNLVMFVGLQ GSGKTTTCTK YADYHRRKGF NPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDMFR KEKCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHIL DFEVFEVNPF VSRLLGMGDL
301: SGLVNKIHEV IMPNNQPPNI IGPQLVEGTF TLRLLYEMFQ TLQSMGPLGQ VVSMIPGFSA QFIEKGNEKE GQAKIKRYMT MMDSMTDAEL DGTNPKLMNQ
401: SRINRIARGS GRLVEEVVHM LEEYKRIAKM WKKLPLPTNN RRLNTNRDIR PIANAIPPNM LNQLGGFVGL QNMMKQMGAQ SR

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.